Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CESA4.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05170 1754 / 0 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT4G32410 1476 / 0 AtCESA1, RSW1, CESA1 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) AT2G25540 1451 / 0 CESA10 cellulose synthase 10 (.1) AT5G17420 1410 / 0 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT5G44030 1391 / 0 IRX5, NWS2, CESA4 IRREGULAR XYLEM 5, cellulose synthase A4 (.1) AT5G09870 1377 / 0 CESA5 cellulose synthase 5 (.1) AT5G64740 1373 / 0 PRC1, IXR2, E112, CESA6 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) AT2G21770 1349 / 0 CESA09, CESA9 cellulose synthase A9 (.1) AT4G39350 1347 / 0 ATH-A, CESA2, ATCESA2 cellulose synthase A2 (.1) AT4G18780 1249 / 0 LEW2, IRX1, ATCESA8, CESA8 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G052600 [exp] 2023 / 0 AT5G05170 1749 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.009G060800 [exp] 1805 / 0 AT5G05170 1838 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.001G266400 [exp] 1796 / 0 AT5G05170 1838 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.018G029400 [exp] 1520 / 0 AT4G32410 1898 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.006G251900 [exp] 1517 / 0 AT4G32410 1899 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.013G019800 [exp] 1441 / 0 AT5G64740 1512 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.006G181900 [exp] 1430 / 0 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) Potri.018G103900 [exp] 1423 / 0 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) Potri.005G027600 [exp] 1422 / 0 AT5G64740 1506 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007538 [exp] 1873 / 0 AT5G05170 1772 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10012198 [exp] 1868 / 0 AT5G05170 1774 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10039607 [exp] 1733 / 0 AT5G05170 1820 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10028597 [exp] 1499 / 0 AT4G32410 1922 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10018902 [exp] 1493 / 0 AT4G32410 1915 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10002939 [exp] 1368 / 0 AT5G64740 1870 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10003526 [exp] 1359 / 0 AT5G64740 1863 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10041063 [exp] 1355 / 0 AT5G64740 1868 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10006161 [exp] 1300 / 0 AT5G64740 1734 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10007296 [exp] 1249 / 0 AT4G18780 1671 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF13632 [poplar] [flax] Glyco_trans_2_3 Glycosyl transferase family group 2 CL0229 [poplar] [flax] RING PF14569 [poplar] [flax] zf-UDP Zinc-binding RING-finger
Representative CDS sequence Show only first row Show all	>Potri.016G054900.4 pacid=42809894 polypeptide=Potri.016G054900.4.p locus=Potri.016G054900 ID=Potri.016G054900.4.v4.1 annot-version=v4.1 ATGGATCTAGAAGGAGATGATGCTGCCGGGCCAAAAAAAATCCAGGTCTGCCAGATCTGCAGTGATGATATTGGCAAGACTATAGATGGAGAGCCCTTTG TTGCTTGCCATGTATGTGCATTTCCAGTTTGCCGTCCATGTTATGAGTATGAGAGGAAAGATGGTAACCAGTCTTGTCCTCAATGCAAGACTAAATACAA GAGGCATAAAGGAAGCCCTCCAATTCAAGGGGAAGAAATGGGAGATGCTGATTCTGAAGATGTAGGAAACAAGTCAAACCATCACATATCAGGCGTTCAA GATGAGAAACAAAAGATAGAACGTATGCTGGGTTGGGATTCGAGTTCTGGTCGGAAAGAGCATCTTGCAACCACAAACTATGACAAAGATGGTTCTCTTA ACCATATTCCTTATCTGGCTGGTAGACGTTCGGTTTCCGGGGATCTTTCAGCTGCATCTCCCGAGCGTTACTCAATGGCTTCTCCTGAAAGTGGCATCAG AGCTAATATAAGGGTGGTGGATCCAACAAGGGATTCTGGCTCATTGGGGTTTGGCAATGTAGCCTGGAGAGAGAGGATTGATGGTTGGAAGATGAAGCCA GAAAAGAATACTGCTCCGATGAGTGTTAGTAATGCACCATCTGAAGGCAGGGGTGGCGGAGATTTTGATGCCAGCACTGATGTACTCATGGATGATTCCT TACTAAATGATGAAGCCCGCCAGCCTCTCTCAAGGAAGGTTTCTATTCCTTCCTCTAGGATTAACCCTTACAGGATGGTCATAGTTTTGCGGCTTGTTGT CCTTTGCATTTTCTTACACTACCGTTTAACAAATCCAGTGAGGAATGCTTACGCTTTGTGGCTAATATCTGTTATCTGTGAGATATGGTTTGCAATATCA TGGATATTGGATCAGTTCCCTAAATGGCTTCCTGTGAACCGTGAGACATATCTTGACAGGCTATCTCTCAGATATGAGAAAGAAGGAGAGCCGTCTCAGT TGGCTGCTGTTGACATTTTTGTCAGTACAGTCGACCCTTTAAAGGAACCTCCACTGGTCACAGCCAATACAGTACTATCTATTCTTGCAGTTGATTACCC AGTAGACAAAGTCTCTTGTTATGTTTCAGATGATGGAGCTGCTATGTTGACATTTGAAACTATGTCTGAAACGTCTGAATTTGCAAGAAAATGGGTTCCT TTCTGCAAGAGATATGATATTGAGCCCCGAGCTCCAGAATGGTACTTTTCACAGAAGATTGACTACTTAAAAGACAAGGTTCATCCATCATTTGTCAAAG AACGCAGAGCTATGAAGAGAGAATATGAAGAATTTAAAGTTCGTGTCAATGGGCTTGTTGCAAAGGCACAAAAGGTTCCTGATGAAGGATGGGTCATGCA AGATGGTACACCTTGGCCTGGAAATAACATCAGAGATCACCCAGGAATGATCCAGGTTTTCTTGGGCCATAGTGGAGGACTTGACACTGAGGGTAATGAA CTTCCACGGCTAGTGTATGTGTCCCGTGAGAAGCGTCCTGGTTTTCAGCATCATAAGAAAGCTGGTGCTATGAATGCACTTGTTCGTGTTTCAGCAGTCC TCACCAATGGGCCCTTCTTGTTAAATCTTGATTGTGATCATTACATAAACAACAGCAAGGCATTGAGAGAAGCTATGTGTTTTCTAATGGATCCTAATCT TGGAAGAACAGTTTGTTATGTCCAGTTTCCTCAGAGATTTGATGGGATTGATAGAAACGATCGATATGCCAACCGTAACACTGTTTTCTTTGATATAAAT TTAAGAGGATTGGATGGAATCCAAGGCCCTGTATACGTGGGTACAGGGTGTGTTTTCAATAGAACGGCCTTGTATGGCTATGAGCCTCCTCTCAAGCCTA AGCATAAGAAACCAGGGTTTCTGTCTTCATGCTTTGGTGGATCACGAAAGAAGAGTTCTAGATCGGGTAGAAAGGATAGTAAGAAAAAATCAAGCAAGCT TGTAGACCCTACTTTGCCGGTATTCAATTTAGAAGATATAGAAGAAGGGGTTGAAGGTACTGGATTCGATGATGAAAAATCATTGCTCATGTCTCAAATG ACACTTGAGAAAAGATTTGGCCAATCAACCGTGTTTGTTGCTTCCACCCTTATGGAGAACGGTGGTGTTCCGGAGTCCGCCACCCCAGAGTCTCTTCTCA AAGAAGCTATTCATGTCATCAGCTGTGGATATGAAGACAAGTCAGACTGGGGAAGTGAAATAGGATGGATATATGGTTCTGTTACGGAAGATATCCTTAC AGGATTCAAGATGCATGCTCGTGGTTGGAGATCAATCTATTGCATGCCGAAGCGTCCTGCCTTTAAGGGATCTGCTCCCATTAATCTTTCTGATCGTCTA AATCAAGTGCTTCGGTGGGCCTTGGGTTCCGTTGAAATTCTTCTCAGTCGTCACTGCCCCATATGGTATGGCTATAGTGGAAGGCTAAAATGGCTCGAGA GATTTGCTTATATCAACACCACCATTTATCCAATCACATCCATTCCTCTTCTTGCCTATTGTACATTGCCTGCCGTGTGCCTTCTTACGGGAAAGTTCAT TATTCCACAGATTAGTAACATTGCCAGTATCTGGTTCATATCCCTCTTTCTTTCAATCTTTGCAACTGGTATTTTGGAAATGAGATGGAGTGGTGTTGGG ATCGATGAATGGTGGAGGAATGAACAGTTCTGGGTTATTGGAGGTGTGTCAGCTCATCTCTTTGCTGTCTTCCAAGGCCTGCTGAAAGTCCTTGCTGGAA TAGATACAAATTTTACAGTCACTTCAAAAGCATCTGATGAAGATGGTGATTTTACCGAGCTATATATGTTCAAATGGACCACTTTACTTATCCCACCAAC TACTCTCCTCATAATCAATCTGGTTGGAGTGGTTGCAGGAGTCTCTTACGCCATAAACAGTGGTTATCAATCTTGGGGTCCTCTCTTTGGCAAGCTTTTC TTTGCTTTCTGGGTGATTATTCATCTTTATCCTTTCCTCAAGGGTCTGATGGGACGCCAAAACCGAACACCTACGATTGTTGTGGTGTGGTCAGTTCTCC TTGCTTCTATCTTCTCCTTACTGTGGGTACGTGTTGACCCTTTTACAACCAAGGTGACTGGACCAGACGTTACGCAGTGTGGCATCAACTGCTAG
AA sequence Show only first row Show all	>Potri.016G054900.4 pacid=42809894 polypeptide=Potri.016G054900.4.p locus=Potri.016G054900 ID=Potri.016G054900.4.v4.1 annot-version=v4.1 MDLEGDDAAGPKKIQVCQICSDDIGKTIDGEPFVACHVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHKGSPPIQGEEMGDADSEDVGNKSNHHISGVQ DEKQKIERMLGWDSSSGRKEHLATTNYDKDGSLNHIPYLAGRRSVSGDLSAASPERYSMASPESGIRANIRVVDPTRDSGSLGFGNVAWRERIDGWKMKP EKNTAPMSVSNAPSEGRGGGDFDASTDVLMDDSLLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVVLCIFLHYRLTNPVRNAYALWLISVICEIWFAIS WILDQFPKWLPVNRETYLDRLSLRYEKEGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFETMSETSEFARKWVP FCKRYDIEPRAPEWYFSQKIDYLKDKVHPSFVKERRAMKREYEEFKVRVNGLVAKAQKVPDEGWVMQDGTPWPGNNIRDHPGMIQVFLGHSGGLDTEGNE LPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLMDPNLGRTVCYVQFPQRFDGIDRNDRYANRNTVFFDIN LRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHKKPGFLSSCFGGSRKKSSRSGRKDSKKKSSKLVDPTLPVFNLEDIEEGVEGTGFDDEKSLLMSQM TLEKRFGQSTVFVASTLMENGGVPESATPESLLKEAIHVISCGYEDKSDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRL NQVLRWALGSVEILLSRHCPIWYGYSGRLKWLERFAYINTTIYPITSIPLLAYCTLPAVCLLTGKFIIPQISNIASIWFISLFLSIFATGILEMRWSGVG IDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFTELYMFKWTTLLIPPTTLLIINLVGVVAGVSYAINSGYQSWGPLFGKLF FAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSVLLASIFSLLWVRVDPFTTKVTGPDVTQCGINC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Potri.016G054900 [exp]	0	1	Pt-CESA4.2
AT1G10120	bHLH	bHLH074, CIB4	basic helix-loop-helix (bHLH) ...		Potri.005G146500 [exp]	1.41	0.8602
AT5G12970			Calcium-dependent lipid-bindin...		Potri.001G015700 [exp]	3.00	0.8648
AT5G58300			Leucine-rich repeat protein ki...		Potri.019G131500 [exp]	3.16	0.8311
AT5G45780			Leucine-rich repeat protein ki...		Potri.011G068700 [exp]	5.91	0.8454
AT4G28760			Protein of unknown function (D...		Potri.002G253600 [exp]	8.48	0.8108
AT5G47770		FPS1	farnesyl diphosphate synthase ...		Potri.006G003400 [exp]	10.00	0.8100	Pt-FPS1.2
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Potri.001G360800 [exp]	10.95	0.8243
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.008G185500 [exp]	11.66	0.8218
AT1G68410			Protein phosphatase 2C family ...		Potri.008G123600 [exp]	18.46	0.8281
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Potri.006G079300 [exp]	20.68	0.8510	CAS.3

Compare expression of checked genes

Potri.016G054900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.