Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41830 1184 / 0 Uncharacterized protein (.1) AT5G21080 1077 / 0 Uncharacterized protein (.1) AT5G26850 582 / 0 Uncharacterized protein (.1.2.3.4) AT1G05960 560 / 0 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G052100 [exp] 1866 / 0 AT2G41830 1110 / 0.0 Uncharacterized protein (.1) Potri.007G128000 [exp] 935 / 0 AT1G05960 1014 / 0.0 ARM repeat superfamily protein (.1.2) Potri.013G008500 [exp] 602 / 0 AT5G26850 1132 / 0.0 Uncharacterized protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026298 [exp] 1261 / 0 AT2G41830 1083 / 0.0 Uncharacterized protein (.1) Lus10042372 [exp] 937 / 0 AT2G41830 840 / 0.0 Uncharacterized protein (.1) Lus10001161 [exp] 810 / 0 AT1G05960 999 / 0.0 ARM repeat superfamily protein (.1.2) Lus10006583 [exp] 803 / 0 AT1G05960 960 / 0.0 ARM repeat superfamily protein (.1.2) Lus10019717 [exp] 696 / 0 AT2G41830 1012 / 0.0 Uncharacterized protein (.1) Lus10029842 [exp] 575 / 0 AT5G26850 1115 / 0.0 Uncharacterized protein (.1.2.3.4) Lus10020697 [exp] 571 / 0 AT5G26850 1103 / 0.0 Uncharacterized protein (.1.2.3.4) Lus10016400 [exp] 571 / 0 AT5G21080 538 / 5e-175 Uncharacterized protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.016G055100.4 pacid=42809168 polypeptide=Potri.016G055100.4.p locus=Potri.016G055100 ID=Potri.016G055100.4.v4.1 annot-version=v4.1 ATGAGCGCGATTTCGGGTTTAGTTTCAAGGCAAGTAATGCCTGCATGTGGTAGCCTTTGTTTCTTTTGCCCTGCAATGAGGGCAAGGTCCAGACAGCCTG TCAAGAGGTATAAGAAGCTCATGGCAGATATTTTTCCTCGAAACCAGGAGGAAGGACCAAATGACCGGAAGATTGGAAAACTATGTGAATATGCTGCTAA AAATCCTCTCCGTATCCCAAAGATCACATGTTCTCTTGAGCAAAGGTGTTACAAGGAACTGAGAATTGAGAACTTTCAATCTGCAAAAATTGTGATGTGC ATTTACAGGAAATTGCTGGTCACCTGCAAGGAGCAAATGACTTTGTTTGCAAGTAGCTTACTGGGCATCATTAATACTCTATTGGATCAAACACGGCAGG ATGACATCCAAGTTATAGGATGCGAGACTCTGTTTGACTTTGTAAATAATCAGAAGGATGGAACTTACATGTTTAACTTAGAAGGATTTATTCCAAAACT CTGTCAGTTTGCTCAAGAAGAGGGAGAGGATGAAAGGGCAAAAAGTCTACGGGCAGCTGGGCTGCAAGCCCTTTCTTCAATGGTTTGGTTTATGGGTCAA CATTCTCATATTTCAGTGGAGTTTGACAATGTAGTTTCAGTAGTCTTGGAAAATTATGGCGGTCCTATGAGGAGTTCAGAGAACCTAGATACTGACAAGC AAGGTCCTCAGAGTCGGTGGGTGCAAGAAGTGCTGAAAAATGAGGGGCATGTCACTCCTTTGCCAGAGGTCATTACAAGGGTTCCTTCTTGGAGGACAAT TGTAAATGAGAGAGGCGAAGTAAATATGACAGAAGAAGACTCCCAGAACCCCTGCTTTTGGTCCAGGGTTTGCTTGCATAACATGGCCAAGTTAGGGAAG GAGGCTACAACAATTCGGCGTGTTCTGGAATCGTTGTTCCGATACTTCGATAATGGAAATTTATGGTCCCTTGAAAATGGTCTTGCCTTCCCAGTTTTAA AGGATATGCAGTTTTTAATGGATAATTCTGGGCAAAATACACATGTTTTGCTTTCCATATTGATTAAGCATCTCGATCACAAAAATGTCCTTAAAGAACC CAGCATGCAGCTCGATATTGTTGAGGTTACCACTGCCCTTGCTCAGCATGTGAAGGCCGACCCTTCTGTGGCAATAATTGGTGCTGTAAGTGATGTCATG CGTCATTTGCGGAAAAGCATACACTGCTCACTTGATGATGCAAATCTGGGTGCTGAAATAAAAAATTGGAACAAAAACTTGAGAGAAGTGGTGGATAAAT GCCTTACTGAGTTAGCATATAAGGTCGGAGATGCTGGCCCTATCCTTGACATTATGGCTGTGATGCTGGAGAACATCTCAAATATTACTGTTATAGCCAG AACTACTATTTCTGCTGTTTATCGTACTGCTCAAATTGTTGCCTCATTACCAAATTTGTCATATCAAAACAAGGCATTCCCTGAAGCTCTATTTCATCAG TTACTTCCAGCAATGGTCCATCCTGACCATGAAACAAGAGTTGGAGCTCACCGCATCTTTTCTGTTGTTCTTGTGCCATCTTCAGTTTCACCTTGTCCAT CCTCGAATAATAAAGGCTCTGATCTTTCACGGACTCTGTCAAGAACTGTCTCTGTCTTTTCTTCTTCAGCTGCCCTTTTTGACAAGCAACGGAGGGATAA AACTTCCACCAGGGAAAATGTATTTCAAGACAGCAAAAATAATGCTCATGAAGGTGAACAAATCAGTAATGGGATGCTTGCTAGATTGAAGTCATCTACC AGTCGAGTATACAGCTTGAAAAATCCTCTTGTACCTTCAACATCAGATGAGAATCCTGTAAACAACTTAAATAACGAAACCGAGGCTGGTTCTCTAAGGC TGAGTAGCCGCCAGATCACTCTTTTGCTTTCATCAATTTGGACACAGTCCATTTCTCCTGCAAATACACCTCAAAACTATGAAGCAATTTCTCATACATA TAACCTGGTGTTGTTGTTCTCTCGAGCCAAGAATTCCAGTGACGAGGCTTTGATTAGAAGTTTTCAGCTTGCATTTTCTTTGAGAAACATTGCTCTTAAG CAAGAAGAGCCACTCCCACCATCACGTCGCAGATCCCTCTTTGCCTTGGCAACTTCAATGATTCTTTTTACATCGAAAGCGTACAATATTATTCCGCTTA TTTATTGTACGAAGGTGGTGCTGACAGAAAAAATGATCGATCCATTTTTGCACTTAGTTGAAGATCGCAAGTTACAGGCTGTGAGTACTGAATCTGGCCA CCCTGCAATTGTTTATGGATCTAAGGAGGATGATTGCTCAGCTTTAAAATCCCTTTCAGAGATAGATGTTACTGGGAACCAAAGCAGGGAATTCTTTGCT GCTGAGATTGCTAAGAGCTTGGGAAATTTGGCAAAGTTTGAAGCATCCACTATACAGGAGAAACTCCTCAACGAATTCTTACCCAATGATGTGTGTCCTT TGGGAGCCCAGTTGTTTATGGATACTCCAATGCAAATAGATCAGGTTGATTCCGAAGATAACTCTCTAATGGAGGGCACTCCACTTTTTACATTAGATGA TGTTTTTCTAGATTCATTGGAAGATCAAACCACTCAGACCACAGAAATTGTCTTCCAAGACACTGACCTATTGAGCGTCAATCAACTTCTAGAATCAGTC TTGGAGACGACACAACAAGTTGGACGATTGTCTGTAACTGCACCTGATGTGTCTTATAAGGAAATGGCTCATCATTGCGAAACCCTTCTGATGGGAAAGC AACAGAAGATGTCTCATGTGATGAGTGTCCAGTTGAAACAGGAGAGTTTGATGAATGTCTCCCTCCAGAACCATGATGATGAAATAAGGAAGGTTACCAA TCCTTTCCTTGAACAAAATATCATTGCAAGCCCACAATTACCACTAGTTGGCACTGTTCAAATGCAGTGTGGGGCAGAGTATCAACATCATCCTAACTTC TTCAGGCTACCGGCATCAAGCCCCTTTGATAACTTTCTAAAAGCTGCTGGTTGTTGA
AA sequence Show only first row Show all	>Potri.016G055100.4 pacid=42809168 polypeptide=Potri.016G055100.4.p locus=Potri.016G055100 ID=Potri.016G055100.4.v4.1 annot-version=v4.1 MSAISGLVSRQVMPACGSLCFFCPAMRARSRQPVKRYKKLMADIFPRNQEEGPNDRKIGKLCEYAAKNPLRIPKITCSLEQRCYKELRIENFQSAKIVMC IYRKLLVTCKEQMTLFASSLLGIINTLLDQTRQDDIQVIGCETLFDFVNNQKDGTYMFNLEGFIPKLCQFAQEEGEDERAKSLRAAGLQALSSMVWFMGQ HSHISVEFDNVVSVVLENYGGPMRSSENLDTDKQGPQSRWVQEVLKNEGHVTPLPEVITRVPSWRTIVNERGEVNMTEEDSQNPCFWSRVCLHNMAKLGK EATTIRRVLESLFRYFDNGNLWSLENGLAFPVLKDMQFLMDNSGQNTHVLLSILIKHLDHKNVLKEPSMQLDIVEVTTALAQHVKADPSVAIIGAVSDVM RHLRKSIHCSLDDANLGAEIKNWNKNLREVVDKCLTELAYKVGDAGPILDIMAVMLENISNITVIARTTISAVYRTAQIVASLPNLSYQNKAFPEALFHQ LLPAMVHPDHETRVGAHRIFSVVLVPSSVSPCPSSNNKGSDLSRTLSRTVSVFSSSAALFDKQRRDKTSTRENVFQDSKNNAHEGEQISNGMLARLKSST SRVYSLKNPLVPSTSDENPVNNLNNETEAGSLRLSSRQITLLLSSIWTQSISPANTPQNYEAISHTYNLVLLFSRAKNSSDEALIRSFQLAFSLRNIALK QEEPLPPSRRRSLFALATSMILFTSKAYNIIPLIYCTKVVLTEKMIDPFLHLVEDRKLQAVSTESGHPAIVYGSKEDDCSALKSLSEIDVTGNQSREFFA AEIAKSLGNLAKFEASTIQEKLLNEFLPNDVCPLGAQLFMDTPMQIDQVDSEDNSLMEGTPLFTLDDVFLDSLEDQTTQTTEIVFQDTDLLSVNQLLESV LETTQQVGRLSVTAPDVSYKEMAHHCETLLMGKQQKMSHVMSVQLKQESLMNVSLQNHDDEIRKVTNPFLEQNIIASPQLPLVGTVQMQCGAEYQHHPNF FRLPASSPFDNFLKAAGC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41830			Uncharacterized protein (.1)		Potri.016G055100 [exp]	0	1
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Potri.019G025200 [exp]	2.00	0.8794
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Potri.013G051200 [exp]	3.16	0.8638
AT5G13000		CALS3, ATGSL12	callose synthase 3, glucan syn...		Potri.003G214200 [exp]	4.00	0.8545	CALS1.4
					Potri.019G087800 [exp]	5.47	0.8191
AT3G15410			Leucine-rich repeat (LRR) fami...		Potri.011G121700 [exp]	5.47	0.8575
AT1G47550		SEC3A	exocyst complex component sec3...		Potri.014G039100 [exp]	5.47	0.8467
AT2G39750			S-adenosyl-L-methionine-depend...		Potri.008G059500 [exp]	6.70	0.8260
AT5G23720		PHS1	PROPYZAMIDE-HYPERSENSITIVE 1, ...		Potri.015G105000 [exp]	17.60	0.8248	Pt-PHS1.2
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Potri.005G094200 [exp]	17.88	0.7599
AT5G22400			Rho GTPase activating protein ...		Potri.004G201600 [exp]	20.32	0.8337

Compare expression of checked genes

Potri.016G055100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.