Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34690 295 / 1e-102 ACD11 ACCELERATED CELL DEATH 11, Glycolipid transfer protein (GLTP) family protein (.1) AT4G39670 203 / 3e-66 Glycolipid transfer protein (GLTP) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G051800 [exp] 375 / 2e-134 AT2G34690 305 / 9e-107 ACCELERATED CELL DEATH 11, Glycolipid transfer protein (GLTP) family protein (.1) Potri.008G119600 [exp] 221 / 5e-73 AT4G39670 307 / 1e-106 Glycolipid transfer protein (GLTP) family protein (.1) Potri.005G188600 [exp] 49 / 4e-07 AT1G21360 259 / 3e-88 glycolipid transfer protein 2 (.1) Potri.002G071100 [exp] 46 / 5e-06 AT1G21360 253 / 8e-86 glycolipid transfer protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023267 [exp] 306 / 5e-107 AT2G34690 293 / 5e-102 ACCELERATED CELL DEATH 11, Glycolipid transfer protein (GLTP) family protein (.1) Lus10038537 [exp] 296 / 8e-101 AT2G34690 279 / 5e-94 ACCELERATED CELL DEATH 11, Glycolipid transfer protein (GLTP) family protein (.1) Lus10035024 [exp] 207 / 4e-67 AT4G39670 305 / 4e-105 Glycolipid transfer protein (GLTP) family protein (.1) Lus10034305 [exp] 185 / 1e-54 AT1G68570 681 / 0.0 Major facilitator superfamily protein (.1) Lus10021685 [exp] 113 / 3e-31 AT4G39670 175 / 2e-55 Glycolipid transfer protein (GLTP) family protein (.1) Lus10041466 [exp] 89 / 2e-20 AT1G68570 850 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08718 [poplar] [flax] GLTP Glycolipid transfer protein (GLTP)
Representative CDS sequence Show only first row Show all	>Potri.016G055300.2 pacid=42810402 polypeptide=Potri.016G055300.2.p locus=Potri.016G055300 ID=Potri.016G055300.2.v4.1 annot-version=v4.1 ATGGGCGATTTAGATACTGCAAAGCCACTAAGAAAGATCGCAGAAGCCTTTAAAGAGCTAGAAGCTACAATAAACTCGCAATCCCAAGAAGTTGAAGTGG CACCATTCTCTCATGCTTGTTCTCTCGTTTCTCCTCTCTTTGGTTGCTTAGGGATCGCTTTTAAATTCGCTGAAGTGGATTATGTTGCCAAGGTGCTTGA TCTTGCAGAGGCATCGAAGTCGATTGGTACATTACAAAGTTTGTTAGAGAAGGATATACAAGGGAATTCTGTGAGAAAATCCGGGAGTCACTCAAGAAAT CTTTTGAGAGTAAAGCGTGGGCTTGTTATGGTCAAGGTCTTGTTTGAGCTGATTCTTGTTACAGAGGGAAATTCTTTGAAGGGCCCTGCTTCGAAGGCTT ATGAACAGGTATTTGCTCCCCATCATGGGTGGGCAATTAGGAAAGCTGTTGCTGCAGGGATGTATGCCCTTCCTACTAAAGCACAGCTGTTAAATAACCT AAATGAAGATGAAAGCTCGGCAAGTATTCAAATGCAGAGTTATGTTGCTGCATCGGCGCCGGTAATAATGTACGTTGAAAAACTCTTCCTAACCAGAGGA TTGGGTATAGATTGGTGA
AA sequence Show only first row Show all	>Potri.016G055300.2 pacid=42810402 polypeptide=Potri.016G055300.2.p locus=Potri.016G055300 ID=Potri.016G055300.2.v4.1 annot-version=v4.1 MGDLDTAKPLRKIAEAFKELEATINSQSQEVEVAPFSHACSLVSPLFGCLGIAFKFAEVDYVAKVLDLAEASKSIGTLQSLLEKDIQGNSVRKSGSHSRN LLRVKRGLVMVKVLFELILVTEGNSLKGPASKAYEQVFAPHHGWAIRKAVAAGMYALPTKAQLLNNLNEDESSASIQMQSYVAASAPVIMYVEKLFLTRG LGIDW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Potri.016G055300 [exp]	0	1
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Potri.009G121400 [exp]	1.73	0.7134
AT1G53210			sodium/calcium exchanger famil...		Potri.001G375500 [exp]	8.00	0.7610
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Potri.005G045100 [exp]	15.65	0.6734	NHX2.1
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Potri.002G113800 [exp]	16.30	0.7471	RXW8.1
AT2G17530			Protein kinase superfamily pro...		Potri.007G063100 [exp]	25.37	0.7087
AT3G04240		SEC	secret agent, Tetratricopeptid...		Potri.013G051400 [exp]	26.83	0.6631	SEC.1
AT2G37180		PIP2C, PIP2;3, ...	RESPONSIVE TO DESICCATION 28, ...		Potri.016G089500 [exp]	38.52	0.5926	Pt-PIP2.2
AT2G28680			RmlC-like cupins superfamily p...		Potri.008G102900 [exp]	46.90	0.6650
AT1G73920			alpha/beta-Hydrolases superfam...		Potri.012G060600 [exp]	48.96	0.5916
AT2G13100		AtG3Pp5	glycerol-3-phosphate permease ...		Potri.018G115000 [exp]	54.96	0.6037

Compare expression of checked genes

Potri.016G055300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.