Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41820 1312 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G63930 469 / 2e-149 Leucine-rich repeat protein kinase family protein (.1) AT2G33170 465 / 1e-147 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G17230 464 / 2e-147 Leucine-rich receptor-like protein kinase family protein (.1) AT5G61480 441 / 1e-139 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT1G34420 430 / 4e-136 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G48940 428 / 1e-133 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G49660 421 / 1e-132 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G24240 423 / 1e-131 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G56040 419 / 2e-130 Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G051700 [exp] 1621 / 0 AT2G41820 1343 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G084800 [exp] 480 / 2e-155 AT1G34420 753 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.013G051300 [exp] 472 / 1e-150 AT5G63930 1281 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G025500 [exp] 467 / 1e-148 AT5G63930 1320 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G139700 [exp] 461 / 1e-146 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G053400 [exp] 461 / 2e-146 AT2G33170 1311 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.003G174900 [exp] 460 / 5e-146 AT2G33170 1348 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.013G114200 [exp] 452 / 1e-144 AT1G34420 793 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.002G111700 [exp] 424 / 5e-133 AT5G49660 1229 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012193 [exp] 1247 / 0 AT2G41820 1232 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007543 [exp] 1159 / 0 AT2G41820 1130 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011761 [exp] 501 / 3e-163 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10009429 [exp] 432 / 5e-137 AT1G34420 809 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10000509 [exp] 430 / 6e-135 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10027221 [exp] 420 / 2e-131 AT5G61480 1263 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10000814 [exp] 419 / 3e-131 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10017782 [exp] 415 / 3e-129 AT1G34110 1467 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10038930 [exp] 413 / 8e-129 AT5G61480 1248 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10011756 [exp] 413 / 5e-128 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.016G055400.1 pacid=42809341 polypeptide=Potri.016G055400.1.p locus=Potri.016G055400 ID=Potri.016G055400.1.v4.1 annot-version=v4.1 ATGACATTTTTTTGCTTAGTGTGTCTTTTTCTTGTTGGGTTTTTATCAAAGTCCCAGTTAGTGACTGCTCAGTTGGATGAACAAGCTATACTGTTAGCCA TTAAAGGAGAGCTTGGAGTCCCTGGGTGGGGTGCCAACAACACAAATTACTGCAACTGGGCTGGCATTAACTGTGGCTTGAATCATTCAATGGTTGAAGG GCTTGATCTTTCAAGGCTTGGCCTTAGAGGTAATGTGACTCTGGTCTCCGAGCTCAAAGCATTGAAGCAGCTTGATCTTTCTAGCAATAGTTTTCATGGT GAAATTCCTTCAGCTTTTGGGAATTTGTCTCAGCTTGAATTTCTTGATTTGTCTTTGAATAAGTTTGGAGGTGTGATTCCTATGGAGTTGGGTAGTCTTA GAAACCTCAAGTCATTGAACCTTTCTAACAACATGCTTGGAGGATGGATACCTGATGAGTTTCAGGGTCTAGAAAAGTTGGAGGATTTTCAAATTTCTAG TAATAAGCTGAATGGTTCTATACCATCTTGGGTGGGTAATTTGACAAACTTGAGGGTTTTTACCGCCTATGAGAATGAATTAGGTGGTGAAATTCCTGAT AATCTAGGTTCAGTTTCTGAGTTGAGGGTGTTGAACCTTCATTCGAACATGCTCGAAGGGCCAATACCAAAGAGCATTTTCGCTATGGGGAAGTTGGAAG TCTTGATTCTTACTATGAATCGGTTCAACGGTGAACTTCCTGAATCAGTTGGCAACTGCAGAGGCCTTTCTAATATCCGAATCGGGAACAATGATCTCGT AGGAGTCATCCCTAAGGCAATTGGGAATGTTAGCAGCCTCACATATTTCGAAGTGGCCAATAACCACATATCTGGTGAGATTGTGTCTGAGTTTGCTCGG TGCTCTAATCTTACCCTCCTAAATTTGGCCTCAAATGGATTTACTGGAGTTATTCCTCCTGAACTTGGACAGCTTGTAAATCTGCAGGAATTGATTCTTT CAGGCAATAGTTTGTATGGAGATATCCCGAAATCAATTCTTGGGTGGAAGAGTCTTAACAAGCTTGACCTTAGCAATAATAGATTCAATGGCACTGTCCC TAATGATATTTGCAACATGTCAAGATTGCAGTTCTTGCTTCTGGGTCAGAATTCAATCAAAGGTGAGATACCTCACGAGATTGGAAATTGCATGAAGCTT CTCGAGTTGCAAATGGGCAGCAACTACTTGACTGGAAGTATCCCTCCGGAGATTGGTCACATCAGGAATTTACAGATAGCCTTGAATTTGAGCTTCAATC ATCTCCATGGAGCACTGCCCCCTGAATTAGGGAAGCTCGACAAGCTGGTTTCATTGGATGTCTCCAACAATCAACTTTCGGGCACTATCCCACCTTCATT CAAGGGAATGTTAAGTTTGATAGAGGTTAATTTCTCAAACAATCTGTTCAGTGGCCCTGTGCCCACCTTTGTACCGTTTCAAAAGAGTCTAAATTCAAGC TTTTTTGGGAACAAAGGTCTCTGTGGTGAGCCATTGAGTTTGTCATGTGGAAATTCTTATCCTTCTGGTCGGAAGAATTACCATCATAAGGTCTCTTACA GGATTATACTAGCTGTTATTGGTTCTGGTTTGGCGGTATTTGTCTCAGTAACTATAGTTGTTCTGCTGTTTATGCTGAGGGAGAGTCAGGAAAAGGCAGC CAAAACTGCAGGAATTGATGATGACAAAATCAATGACCAACCAGCAATAATAGCCGGAAATGTCTTTGTTGAAAATCTCAGGCAAGCAATAGATCTTGAT GCTGTTGTTAAAGCAACTTTGAAAGATTCAAATAAGATCAGCAGTGGGACTTTCAGCGCGGTATACAAGGCAGTTATGCCTTCTGGGATGGTATTGATGG CGAGGAGACTAAAATCCATGGACAGAACCATTATTCATCACCAGAACAAGATGATAAGGGAGCTTGAAAGACTGAGCAAGCTCTGTCATGATAATCTAGT GCGACCAGTTGGGTTTGTAATTTACGAAGACATCGTTCTTTTGCTTCATAATTACTTACCTAATGGGACATTAGCTCAGCTTCTTCATGAATCAAGCAAG AAATCCGAGTACGAACCTGATTGGCCTACAAGGTTATCCATTGCCATAGGGGTGGCAGAAGGATTGGCTTTTCTTCATCACGTGGCCATAATACACCTTG ACATTTCTTCTTGTAATGTTCTTTTAGATGCTGACTTTAGGCCCTTGGTTGGGGAAGTGGAGATATCAAAGCTCTTGGATCCATCCAGAGGCACCGCAAG CATCAGTGCAGTTGCAGGGTCTTTTGGTTATATTCCCCCAGAGTATGCATACACAATGCAAGTTACCGCTCCAGGAAATGTTTATAGCTATGGGGTCGTA CTGCTTGAAATCCTAACAACTCGGATACCAGTTGACGAGGACTTTGGTGAAGGGGTAGATTTGGTGAAGTGGGTTCATGGTGCTCCAGCTAGGGGAGAGA CTCCTGAGCAGATTCTTGATGCAAGACTCAGCACCGTTTCCTTTGGTTGGAGGAGAGAGATGCTGGCAGCTCTTAAGGTAGCATTACTCTGCACCGACAG CACACCAGCAAAGCGGCCAAAAATGAAGAAGGTAGTTGAAATGCTTCAAGAAATAAAGCAAGGCTGA
AA sequence Show only first row Show all	>Potri.016G055400.1 pacid=42809341 polypeptide=Potri.016G055400.1.p locus=Potri.016G055400 ID=Potri.016G055400.1.v4.1 annot-version=v4.1 MTFFCLVCLFLVGFLSKSQLVTAQLDEQAILLAIKGELGVPGWGANNTNYCNWAGINCGLNHSMVEGLDLSRLGLRGNVTLVSELKALKQLDLSSNSFHG EIPSAFGNLSQLEFLDLSLNKFGGVIPMELGSLRNLKSLNLSNNMLGGWIPDEFQGLEKLEDFQISSNKLNGSIPSWVGNLTNLRVFTAYENELGGEIPD NLGSVSELRVLNLHSNMLEGPIPKSIFAMGKLEVLILTMNRFNGELPESVGNCRGLSNIRIGNNDLVGVIPKAIGNVSSLTYFEVANNHISGEIVSEFAR CSNLTLLNLASNGFTGVIPPELGQLVNLQELILSGNSLYGDIPKSILGWKSLNKLDLSNNRFNGTVPNDICNMSRLQFLLLGQNSIKGEIPHEIGNCMKL LELQMGSNYLTGSIPPEIGHIRNLQIALNLSFNHLHGALPPELGKLDKLVSLDVSNNQLSGTIPPSFKGMLSLIEVNFSNNLFSGPVPTFVPFQKSLNSS FFGNKGLCGEPLSLSCGNSYPSGRKNYHHKVSYRIILAVIGSGLAVFVSVTIVVLLFMLRESQEKAAKTAGIDDDKINDQPAIIAGNVFVENLRQAIDLD AVVKATLKDSNKISSGTFSAVYKAVMPSGMVLMARRLKSMDRTIIHHQNKMIRELERLSKLCHDNLVRPVGFVIYEDIVLLLHNYLPNGTLAQLLHESSK KSEYEPDWPTRLSIAIGVAEGLAFLHHVAIIHLDISSCNVLLDADFRPLVGEVEISKLLDPSRGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVV LLEILTTRIPVDEDFGEGVDLVKWVHGAPARGETPEQILDARLSTVSFGWRREMLAALKVALLCTDSTPAKRPKMKKVVEMLQEIKQG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41820			Leucine-rich repeat protein ki...		Potri.016G055400 [exp]	0	1
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Potri.016G093600 [exp]	1.00	0.9336	PGP1.2
AT5G58520			Protein kinase superfamily pro...		Potri.001G280700 [exp]	2.23	0.9104
AT5G06940			Leucine-rich repeat receptor-l...		Potri.016G051600 [exp]	4.47	0.9234
AT3G54030			Protein kinase protein with te...		Potri.016G105800 [exp]	5.19	0.9145
AT5G64667		IDL2	inflorescence deficient in abs...		Potri.005G057400 [exp]	6.00	0.9014
AT3G14940		ATPPC3	phosphoenolpyruvate carboxylas...		Potri.011G110700 [exp]	6.48	0.8770	PEPC.2
AT1G47670			Transmembrane amino acid trans...		Potri.014G036500 [exp]	6.63	0.9131
AT3G08490			unknown protein		Potri.009G061300 [exp]	7.21	0.8934
AT2G19170		SLP3	subtilisin-like serine proteas...		Potri.006G076200 [exp]	8.36	0.8847	SLP3.1
AT1G69160			unknown protein		Potri.008G098200 [exp]	8.77	0.8950

Compare expression of checked genes

Potri.016G055400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.