Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69490 111 / 2e-27 NAC NAP, ANAC029, ATNAP Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) AT1G61110 112 / 3e-27 NAC ANAC025 NAC domain containing protein 25 (.1) AT3G15510 106 / 6e-25 NAC ATNAC2, ANAC056, NARS1 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) AT1G77450 103 / 7e-25 NAC ANAC032 NAC domain containing protein 32 (.1) AT5G63790 103 / 3e-24 NAC ANAC102 NAC domain containing protein 102 (.1) AT5G08790 102 / 3e-24 NAC ATAF2, ANAC081 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G04070 102 / 2e-23 NAC ANAC047 NAC domain containing protein 47 (.1.2) AT4G27410 100 / 5e-23 NAC RD26, ANAC072 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT3G15500 100 / 5e-23 NAC ATNAC3, ANAC055 NAC domain containing protein 55, NAC domain containing protein 3 (.1) AT1G52890 99 / 1e-22 NAC ANAC019 NAC domain containing protein 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G051400 [exp] 201 / 4e-60 AT3G04070 121 / 1e-31 NAC domain containing protein 47 (.1.2) Potri.018G095000 [exp] 143 / 2e-37 AT1G01720 187 / 3e-56 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.009G052300 [exp] 126 / 8e-32 AT1G01720 179 / 2e-53 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.001G256600 [exp] 122 / 1e-29 AT3G04070 190 / 7e-56 NAC domain containing protein 47 (.1.2) Potri.009G052200 [exp] 120 / 6e-29 AT4G27410 188 / 1e-55 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.011G046700 [exp] 114 / 7e-28 AT1G61110 331 / 8e-113 NAC domain containing protein 25 (.1) Potri.004G038000 [exp] 114 / 1e-27 AT1G61110 332 / 3e-113 NAC domain containing protein 25 (.1) Potri.008G089000 [exp] 110 / 4e-27 AT1G69490 331 / 6e-115 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Potri.006G129400 [exp] 110 / 2e-26 AT1G61110 247 / 3e-80 NAC domain containing protein 25 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027357 [exp] 124 / 2e-30 AT3G04070 172 / 3e-50 NAC domain containing protein 47 (.1.2) Lus10003847 [exp] 121 / 3e-30 AT1G61110 196 / 3e-60 NAC domain containing protein 25 (.1) Lus10007410 [exp] 114 / 7e-28 AT3G15510 241 / 1e-78 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10036117 [exp] 114 / 2e-27 AT3G15510 241 / 2e-78 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10015076 [exp] 113 / 3e-27 AT1G61110 247 / 5e-80 NAC domain containing protein 25 (.1) Lus10023179 [exp] 112 / 4e-27 AT1G61110 248 / 2e-80 NAC domain containing protein 25 (.1) Lus10002083 [exp] 114 / 1e-26 AT5G08790 225 / 7e-69 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10006547 [exp] 112 / 1e-26 AT3G04070 337 / 4e-114 NAC domain containing protein 47 (.1.2) Lus10003269 [exp] 110 / 3e-26 AT3G04070 324 / 3e-109 NAC domain containing protein 47 (.1.2) Lus10019926 [exp] 108 / 1e-25 AT1G61110 243 / 4e-78 NAC domain containing protein 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.016G055500.2 pacid=42809789 polypeptide=Potri.016G055500.2.p locus=Potri.016G055500 ID=Potri.016G055500.2.v4.1 annot-version=v4.1 ATGAAAAAGATTAGGAATGAACCATTGCCTAAGAACCGTATTCATGAAGTTAATATTTACGAATACCATCCAAAAACACTTGCTGAAAAGTACAAGCTAT ATAGCGAAGATGCGTGGTATTTTTTCACTACTAGATCCAAAAAGTATCCCAATGGGAATCGACCTGATCGAGGAGTGCCTGGTGGATTTTGGAAGCCTAC TGGAAGTCCAGATACAAAAATCCTTGATGAAAACAGCAACACGATGGTCGAAAGAAGATCACTAGATTTTTATGAAGGGAAAGGGAAAGGTGGTAATAGA ACAGACTGGAAGATGCATGAGTACTATCCTACAACTAATAATGTTTCTTCAAGTAATACCAAAGGCATGAGGTTGAATGATTGTATTTTATGTAGAATAT ACCTTAAACGAGAGAAACAAAAGGCAGAAGCTAAGAAGACTGGTAAAAAATCAAGAAACGATGGCAACACTGTAAGCCATGGCCCCGCAGATTCAAGAAA TGATGCTTCCACGTCTTATAATTATAATTCTCAGCAACCAGCCAATCATGCCGCTTTTACTAGTGATACAATGGAAGTTTACTTTAACGGAATCCAACCT TATGATTCCAACATGAATCAATGTTGTTATGGTGACAACAGTAATCAGATTGCGGCAATGATGGAACCAGCAATGTATACATTGCCTAATTCAATTGAGG GGACTGGCAGAGGATCTTCACAACGTGTAGCATTTGCAGTACCAAGTTCTTCCATGCCCTTGACAATGAATGTCGCAGGATTGAATGGGCTCAGCTCTTC CATGCCCCTGACTATGCATGGCGCGGGATTCATGAGGGGACCAAACTCTTCCATGCCCCTGACTATGCATGGCGCGGGATTCATGAGGGGACCAAACTCT TTGATGCCCCTGACTATGCATGCCGCGGGATTGAATGAACCCAACTCTACAATGCACTTACCAGGATTGAATGGACCCAACTTTTCCATGCCCCTGACTA TGCATGGCGCAGGATTGAATGGATCTTCCATGCCCCTGACTATGCTTGACGCAAGATTGAATGGACCCAGCTCTTCCATTCCCCTGACTATGCATGGCGC AGGATTGAATGGACCCAACTCTTCCATGATGCATGGCGCACGATTGAATGGACCCAACTCTTCCATGATGCATGGCGCAGGATTGAATGGATCCAAGTAC TCTTCCATGATGCATGGCGCACGATTGAATGGACCCAACTCTTCCATGATGCATGGCGCAGGAATATTGAACGGACCCAACTCTTCCACGCCCCTGACTA TGCATGGCGCAGGATTGAATGAACCCGCCAACTCTTCCATGCCCCTGACTATGCATGCCGCAGGATTGAATGGACCCATCTCTTCCATGCCGCCGACCAC GCTGCCTATAGATAATATGGAGGGCAATGATCATCTTGTGGAGCCCAATAATGATATTCAATTTAATAATCACCAGGAGTTGAATGACGATCTACGCTAT TCCCTTCCAGATAGTGCTTTTAGGGATGATGCCATGGCAAGGATTCACGAAATGTGGGTTAGTTCCAATAGTAGAAGAGAAGGATAA
AA sequence Show only first row Show all	>Potri.016G055500.2 pacid=42809789 polypeptide=Potri.016G055500.2.p locus=Potri.016G055500 ID=Potri.016G055500.2.v4.1 annot-version=v4.1 MKKIRNEPLPKNRIHEVNIYEYHPKTLAEKYKLYSEDAWYFFTTRSKKYPNGNRPDRGVPGGFWKPTGSPDTKILDENSNTMVERRSLDFYEGKGKGGNR TDWKMHEYYPTTNNVSSSNTKGMRLNDCILCRIYLKREKQKAEAKKTGKKSRNDGNTVSHGPADSRNDASTSYNYNSQQPANHAAFTSDTMEVYFNGIQP YDSNMNQCCYGDNSNQIAAMMEPAMYTLPNSIEGTGRGSSQRVAFAVPSSSMPLTMNVAGLNGLSSSMPLTMHGAGFMRGPNSSMPLTMHGAGFMRGPNS LMPLTMHAAGLNEPNSTMHLPGLNGPNFSMPLTMHGAGLNGSSMPLTMLDARLNGPSSSIPLTMHGAGLNGPNSSMMHGARLNGPNSSMMHGAGLNGSKY SSMMHGARLNGPNSSMMHGAGILNGPNSSTPLTMHGAGLNEPANSSMPLTMHAAGLNGPISSMPPTTLPIDNMEGNDHLVEPNNDIQFNNHQELNDDLRY SLPDSAFRDDAMARIHEMWVSSNSRREG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Potri.016G055500 [exp]	0	1
AT4G13710			Pectin lyase-like superfamily ...		Potri.003G175900 [exp]	9.89	0.8927
AT3G44610			Protein kinase superfamily pro...		Potri.008G024000 [exp]	16.06	0.8772
					Potri.009G132400 [exp]	21.26	0.7860
AT5G06940			Leucine-rich repeat receptor-l...		Potri.006G056600 [exp]	21.56	0.8737
AT4G24780			Pectin lyase-like superfamily ...		Potri.006G196400 [exp]	22.24	0.8671
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Potri.008G151800 [exp]	23.43	0.8688
AT4G39730			Lipase/lipooxygenase, PLAT/LH2...		Potri.003G107100 [exp]	25.61	0.8690
AT5G01890			Leucine-rich receptor-like pro...		Potri.006G108600 [exp]	27.27	0.8747
AT3G18200			nodulin MtN21 /EamA-like trans...		Potri.015G042900 [exp]	27.74	0.8676
AT1G05370			Sec14p-like phosphatidylinosit...		Potri.010G088300 [exp]	30.74	0.8718

Compare expression of checked genes

Potri.016G055500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.