Plant FIBer expression Database

Potri.016G055600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G60080 442 / 8e-158 3'-5'-exoribonuclease family protein (.1)
AT3G07750 85 / 9e-19 3'-5'-exoribonuclease family protein (.1.2)
AT3G12990 82 / 8e-18 RRP45A ribonuclease PH45A (.1.2.3)
AT3G60500 81 / 4e-17 G3, CER7 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G051200
[exp]
551 / 0 AT1G60080 434 / 8e-155 3'-5'-exoribonuclease family protein (.1)
Potri.014G166200
[exp]
86 / 3e-19 AT3G07750 422 / 3e-150 3'-5'-exoribonuclease family protein (.1.2)
Potri.009G047500
[exp]
86 / 1e-18 AT3G60500 548 / 0.0 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3)
Potri.001G253200
[exp]
76 / 3e-15 AT3G60500 526 / 0.0 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021789
[exp]
490 / 1e-176 AT1G60080 439 / 7e-157 3'-5'-exoribonuclease family protein (.1)
Lus10034605
[exp]
476 / 8e-171 AT1G60080 425 / 1e-150 3'-5'-exoribonuclease family protein (.1)
Lus10009708
[exp]
73 / 4e-14 AT3G60500 476 / 3e-166 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3)
Lus10001173
[exp]
71 / 9e-14 AT3G07750 466 / 6e-168 3'-5'-exoribonuclease family protein (.1.2)
Lus10036022
[exp]
69 / 8e-13 AT3G60500 439 / 4e-150 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3)
Lus10001747
[exp]
67 / 1e-12 AT3G07750 462 / 2e-166 3'-5'-exoribonuclease family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0329 S5 PF01138 RNase_PH 3' exoribonuclease family, domain 1
Representative CDS sequence
>Potri.016G055600.2 pacid=42809610 polypeptide=Potri.016G055600.2.p locus=Potri.016G055600 ID=Potri.016G055600.2.v4.1 annot-version=v4.1
ATGGGGGTGCCAGATGCCTCTGGGGACTTGTCATCGGAGATGGAGGTGGATGCTTTCAGACACCTCTTCCCTCTTCGCTATTTTGAGCGTCATCTCTCAG
AATCTATACGCCCAGATGCAAGGCCTCTTGGAAGAGCTAGAGATACAACATTAGCCCTTGGGGCTGTTGCGTCTGCTCATGGGTCAGCATTGGCAAAGAT
TGGTTCAACTACCATGTTGGCTGCCATAAAAATGGAAGTGATGACCCCTTCAACAGAGTCACCAGACGAGGGCTGCATAGCTATTGATTTCCACATGCCT
CCAATTTGTTCTCCAATTGTTAGGCCTGGTAGGCCTGCTGAGGCAGCACCAGTGATATCGAAGCAATTATCTGATACCATATCAAGTTCTGGCATGATTA
ATCTAAAGGAACTGTCCTTGGTCAGTGGAAAAGCTGCCTGGATGGCTTACCTGGACATCTATTGTTTGGATGCTGATGGTGCTCTTTTTGATGCTGCACT
ACTTTCAGCTGTTGCCGCGTTCTCTCATTTGCAAATCCCCATAGTTTCCTTAAATGATGATGGAAAAATAGTACTTGTATTGGAGGAAGATGAGGGAGCA
AAATTGGAGAAGGAGCCTGTCAACAAGGAAAAGAGGAAGCTCACACTGAGCAGCATTCCATTTTCATTGACATGCATACTTCATAAAAATTACATCTTGG
CAGACCCCACTGCAGAGGAAGAGTCCATCATGGAAACTCTTGTAACTGTGGTTTTGGATTCATCTGCCAGACTTGTATCTTTTTACAAGCCAGGTGGATC
AGTTTTTGCCTATACATCAGCTGTCAAGGATTGCGTTGCGTTGACAAGGCAGAGAGTCAAGGAACTTCAAGAGATTTTAGACGAGGCCATTTCTGGTATG
GAGACCGACTAA
AA sequence
>Potri.016G055600.2 pacid=42809610 polypeptide=Potri.016G055600.2.p locus=Potri.016G055600 ID=Potri.016G055600.2.v4.1 annot-version=v4.1
MGVPDASGDLSSEMEVDAFRHLFPLRYFERHLSESIRPDARPLGRARDTTLALGAVASAHGSALAKIGSTTMLAAIKMEVMTPSTESPDEGCIAIDFHMP
PICSPIVRPGRPAEAAPVISKQLSDTISSSGMINLKELSLVSGKAAWMAYLDIYCLDADGALFDAALLSAVAAFSHLQIPIVSLNDDGKIVLVLEEDEGA
KLEKEPVNKEKRKLTLSSIPFSLTCILHKNYILADPTAEEESIMETLVTVVLDSSARLVSFYKPGGSVFAYTSAVKDCVALTRQRVKELQEILDEAISGM
ETD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G60080 3'-5'-exoribonuclease family p... Potri.016G055600
[exp]
0 1
AT5G04520 Protein of unknown function DU... Potri.010G233000
[exp]
2.44 0.8328
AT5G26800 unknown protein Potri.005G011800
[exp]
2.44 0.8669
AT5G57100 Nucleotide/sugar transporter f... Potri.018G139500
[exp]
3.00 0.7646
Potri.009G050900
[exp]
3.16 0.7887
AT1G09800 Pseudouridine synthase family ... Potri.003G008500
[exp]
3.46 0.7935
AT4G38020 tRNA/rRNA methyltransferase (S... Potri.005G147600
[exp]
8.36 0.7776
AT1G28340 AtRLP4 receptor like protein 4 (.1) Potri.004G047300
[exp]
8.71 0.6866
Potri.003G046300
[exp]
8.77 0.7613
AT2G37020 Translin family protein (.1.2) Potri.006G126200
[exp]
8.94 0.7648
AT4G15770 RNA binding (.1) Potri.008G209600
[exp]
9.16 0.7832

Potri.016G055600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.