Plant FIBer expression Database

Potri.016G055700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G41770 1202 / 0 Protein of unknown function (DUF288) (.1)
AT3G57420 1159 / 0 Protein of unknown function (DUF288) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G051000
[exp]
1459 / 0 AT2G41770 1199 / 0.0 Protein of unknown function (DUF288) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035458
[exp]
1249 / 0 AT2G41770 1204 / 0.0 Protein of unknown function (DUF288) (.1)
Lus10031076
[exp]
1234 / 0 AT2G41770 1198 / 0.0 Protein of unknown function (DUF288) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0110 GT-A PF03385 STELLO STELLO glycosyltransferases
Representative CDS sequence
>Potri.016G055700.1 pacid=42810019 polypeptide=Potri.016G055700.1.p locus=Potri.016G055700 ID=Potri.016G055700.1.v4.1 annot-version=v4.1
ATGTTGGTCCAAGGCCGAGTAACAACAAACCCAAATCCAAAATCTCCCAAATCCCAAATCAGACCCACCATCAACCACAACCACCACGACCTCCACCAGC
GCTTCTCAGAGTCAAAATCTTTAGATTTCTCAACATGGGTATCTGAGAATTTCTACAAAATCATCACAATCACAGTGCTGATCGCCACTGTCGCCGCCAT
CTTCTTCCTCCGGAGCACTGGTGACACCGCCGCTTTTCTCTACCTTCAATCACAAGCACAACCTCTAGACAAAACCCATCATTTCCCTCGCATAGATTGG
AACAATATCCCAGCAATCACTGACAAGTCTTCGCCTTATGCGAATTTCCGGTCAGAGAAATGGATTGTTGTTAGTGTCTCTCATTACCCTTCCGATTCGC
TTAAGAAGCTTGATAGAATTAAAGGTTGGCAATTGCTTGCAATTGGGAATTCAAGGACACCAAATGATTGGTCCTTGAAGGGTGCAATTTACTTGTCTTT
AGAACAACAAGCGAGTTTAGGGTTTCGAGTTTTGGGTTATGTACCTTATGATTCTTATTTACGGAAGAGTGTGGGGTATTTGTTCGCGATCCAACATGGG
GCAAAGAAAATTTTTGATGCTGATGATCGTGGAGAGGTTATTGATGGTGATTTAGGGAAGCATTTTGATGTGGAGTTAATAGGGGAGGGGGCTAGGCAGG
AGACTATATTGCAATATAGTCATGAGAATGAGAATAGGAGTGTAGTGAATCCTTACGTTCATTTTGGTCAAAGGACAGTTTGGCCAAGAGGGTTACCATT
AGAGAATGTGGGTGAACTTGGTCATGAAGAGTTTTACACTGAGGTTTATGGTGGGAAACAGTTTATACAACAAGGGATATCGAATGGATTGCCTGATGTT
GATTCTGTGTTTTATTATACTAGGAAAACGGGTTTGGAAGCTTTCGATATTAGGTTTGATGAGCGTGCCCCGAAAGTGGCATTGCCTCAAGGGGTAATGG
TGCCAGTTAATTCGTTTAATACGATTTACCATTCATCGGCTTTCTGGGGTTTGATGCTTCCAGTTTCAGTTAGTAATATGGCTTCTGATGTTTTGAGAGG
CTACTGGGGTCAAAGGCTTCTATGGGAGATTGGTGGGTATGTTGTGGTTTATCCACCTACTGTGCATAGATATGATACAGTTGGGGGGTACCCTTTTTCT
GAAGAGAAGGATCTTCATGTTAATGTTGGGAGGCTTGTTAAGTTCTTGGTTGCATGGAGGTCGAGTGAGCATAGGTTGTTTGAGAAGATTTTAGAGTTGA
GTTTTGCTATGGCAGAGGGGGGGTTTTGGAGTGAGCAGGATGTGAAGTTTACTGCTGCTTGGCTTCAGGACTTGCTTGCTGTAGGGTATCGGCAGCCTAG
GTTAATGTCATTTGAATTGGATCGGCCACGTCCGACTATAGGTCATGGGGATCGAAAGGAGTTTGTTCCTCGGAAGTTTCCGTCTGTGCATCTTGGAGTG
GAGGAAACAGGAACTGTGAATTATGAGATCGCCAATTTAATTCGATGGAGGAAGAATTTTGGGAATGTTGTGCTTATTATGTTTTGCAATGGGCCTGTCG
AACGCACTGCCTTGGAATGGAGATTGCTTTATGGGAGAATATTCAAAACTGTGATTATCTTGTCGTGGCAGAAGAATGAGGATCTTGCTGTTGAAGCAGG
CCATTTGGATCATATATACAAGCATCTGCCCAAGATATTCGATCGATATAGCAGTGCCGAAGGCTTTTTATTCCTTCAAGATGATACTATTCTTAATTAC
TGGAATCTGCTTCAAGCTAGCAAGGCTAAACTTTGGATTACTGACAAGGTATCCAAGTCCTGGACAACTGTGTCAACCAATGGAAACACAGATTGGTATG
CAAAGCAAGCAGAAATGGTAAGAAAAGTTGTTGGCTCAATGCCGGTTCACTTCCAAGTCAATTACAAGGAAGCTATGAAAAGTGACCAGAGCCTCGTGAT
AGGCAGTTCTGAGATATTCTATATTCCTCAGCACTTCGTTACCGACTTTGTAGATCTTGTTGGTTTGGTGGGTGATCTAGATATTCATCAAAAGGTTGCC
ATACCCATGTTCTTTATGTCAATGGATTCACCTCAGAATTTTGATTCAGTGCTTAGCACAATGGTATATAAGCGGAAGCCACCACCTGATAATTCAACTC
TTTATTCTGCTCAAGTACCTGCTGTTCATCCATGGAATGTGTCTAGTGAACAAGATTTCATAAAGCTGATAAGAATAATGGCAGAAGGTGACCCGCTCCT
AATGGAGTTGGTTTGA
AA sequence
>Potri.016G055700.1 pacid=42810019 polypeptide=Potri.016G055700.1.p locus=Potri.016G055700 ID=Potri.016G055700.1.v4.1 annot-version=v4.1
MLVQGRVTTNPNPKSPKSQIRPTINHNHHDLHQRFSESKSLDFSTWVSENFYKIITITVLIATVAAIFFLRSTGDTAAFLYLQSQAQPLDKTHHFPRIDW
NNIPAITDKSSPYANFRSEKWIVVSVSHYPSDSLKKLDRIKGWQLLAIGNSRTPNDWSLKGAIYLSLEQQASLGFRVLGYVPYDSYLRKSVGYLFAIQHG
AKKIFDADDRGEVIDGDLGKHFDVELIGEGARQETILQYSHENENRSVVNPYVHFGQRTVWPRGLPLENVGELGHEEFYTEVYGGKQFIQQGISNGLPDV
DSVFYYTRKTGLEAFDIRFDERAPKVALPQGVMVPVNSFNTIYHSSAFWGLMLPVSVSNMASDVLRGYWGQRLLWEIGGYVVVYPPTVHRYDTVGGYPFS
EEKDLHVNVGRLVKFLVAWRSSEHRLFEKILELSFAMAEGGFWSEQDVKFTAAWLQDLLAVGYRQPRLMSFELDRPRPTIGHGDRKEFVPRKFPSVHLGV
EETGTVNYEIANLIRWRKNFGNVVLIMFCNGPVERTALEWRLLYGRIFKTVIILSWQKNEDLAVEAGHLDHIYKHLPKIFDRYSSAEGFLFLQDDTILNY
WNLLQASKAKLWITDKVSKSWTTVSTNGNTDWYAKQAEMVRKVVGSMPVHFQVNYKEAMKSDQSLVIGSSEIFYIPQHFVTDFVDLVGLVGDLDIHQKVA
IPMFFMSMDSPQNFDSVLSTMVYKRKPPPDNSTLYSAQVPAVHPWNVSSEQDFIKLIRIMAEGDPLLMELV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G41770 Protein of unknown function (D... Potri.016G055700
[exp]
0 1
AT5G52060 ATBAG1 BCL-2-associated athanogene 1 ... Potri.015G135500
[exp]
1.73 0.9149
AT1G33800 Protein of unknown function (D... Potri.013G102200
[exp]
2.64 0.9171
AT3G16630 ATKINESIN-13A, ... P-loop containing nucleoside t... Potri.008G223000
[exp]
3.87 0.9052
AT4G27060 CN, SPR2, TOR1 TORTIFOLIA 1, SPIRAL 2, CONVOL... Potri.011G136700
[exp]
4.24 0.9031
AT3G60380 unknown protein Potri.014G045300
[exp]
4.89 0.9000
AT1G19300 ATGATL1, GATL1,... PARVUS, GAOLAOZHUANGREN 1, GAL... Potri.014G040300
[exp]
6.32 0.9073
AT2G04850 Auxin-responsive family protei... Potri.014G161700
[exp]
7.34 0.8987
Potri.014G162800
[exp]
8.30 0.8364
AT4G03340 Core-2/I-branching beta-1,6-N-... Potri.019G104600
[exp]
8.48 0.8689
AT4G29680 Alkaline-phosphatase-like fami... Potri.006G150900
[exp]
8.71 0.8586

Potri.016G055700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.