Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13710 512 / 0 CPH, SMT1 CEPHALOPOD, sterol methyltransferase 1 (.1.2) AT1G20330 233 / 3e-74 FRL1, CVP1, SMT2 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) AT1G76090 233 / 4e-74 SMT3 sterol methyltransferase 3 (.1) AT1G64970 63 / 6e-11 VTE4, TMT1, G-TMT VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) AT1G73600 57 / 1e-08 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G48600 54 / 8e-08 AtPMEAMT phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G18000 54 / 9e-08 XPL1, NMT1, XIPOTL1, PEAMT XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G69520 49 / 1e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G33120 49 / 2e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G78140 49 / 4e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G058600 [exp] 513 / 0 AT5G13710 591 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.001G263700 [exp] 507 / 0 AT5G13710 587 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.005G245800 [exp] 231 / 3e-73 AT1G20330 667 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.002G016300 [exp] 225 / 4e-71 AT1G20330 647 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.013G077000 [exp] 78 / 7e-16 AT1G64970 441 / 8e-156 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Potri.015G039000 [exp] 57 / 6e-09 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G095100 [exp] 56 / 1e-08 AT1G78140 442 / 2e-156 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G047400 [exp] 56 / 3e-08 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G165700 [exp] 49 / 2e-06 AT1G78140 407 / 1e-142 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029498 [exp] 318 / 1e-108 AT5G13710 380 / 2e-133 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Lus10005625 [exp] 223 / 4e-70 AT1G20330 582 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10023995 [exp] 177 / 2e-53 AT1G20330 459 / 9e-164 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10039600 [exp] 140 / 8e-41 AT5G13710 174 / 2e-54 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Lus10009537 [exp] 67 / 3e-12 AT1G64970 453 / 3e-160 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Lus10020357 [exp] 64 / 4e-11 AT1G64970 434 / 7e-154 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Lus10018010 [exp] 60 / 9e-10 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10042006 [exp] 60 / 1e-09 AT3G18000 841 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10009056 [exp] 57 / 1e-08 AT1G73600 773 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10031348 [exp] 56 / 2e-08 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08241 [poplar] [flax] Methyltransf_11 Methyltransferase domain CL0063 [poplar] [flax] PF08498 [poplar] [flax] Sterol_MT_C Sterol methyltransferase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.016G056000.1 pacid=42810298 polypeptide=Potri.016G056002.1.p locus=Potri.016G056000 ID=Potri.016G056000.1.v4.1 annot-version=v4.1 ATGTCAAATTGTGGGGCATTTTATCTAGCTTCCAACGTTGGAGGGAAAATTGAGAAAACCCAAGTGAAATCTGCTGTCAAAAAATATGAGAAGTACCATG TTGGGGGAGATGATGAGGAAAGAGAAGCTAATTACACTGACATGGTAAACAAGTACTATGACCTTGTGACAAGCTTCTATGAATATGGTTGGGGTGAATC TTTCCATTTTGCTCCTAGGTGGAAGTGGGAGTCTCTTCGTGAGAGCATCAAGAGACATGGGCAGTTAGGTTTGCAGAAAGGACAGAAGGTGTTAGATGTT GGTTGTGGAATTGGAGGGCCATTAAGAGAAATTGCTAGATTCAGTGGAACGTTGATAACAGGGGTAAACAACAACGAATATCAAATATCAAGAGGAGAGG AGTTAAATCGCATGGCGGGAGTGGACAAAACTTGCAACTATGTGAAGGTTGGTTTTATGACGATGCAGGCTGATTTCATGAAAATGCCATTTTCTGACAA CACGTTTGATGCAATATTTGCAATAGAAGCCACTTGCCATGCACCGGATGTGCGTGATTGCTATAAAGAGATTTACAGAGTGTTGAAACCTGGCCAGTGT TTTGCTGCTTATGAATGGTGCATAACTGAATCATTTGACCCTCTGAACCAAGAACACCAAAGGATTAAGATCAATTATGCTTTTGGAAACAGGGAGAAGT TGAGCTTGGCAATGGGAGAATGTCTTGAAGCTCTGCAACTTGCAGGTTTCGAGGTTGTATGGGAGAAGGATGTTGCTGTGGCTTCACCTCTACCTTGGTA TTTTCCTCTTGACAAAAATCAGTTCACACTAAGCAGTTTCCGTGTAACAGCTGTTGGACGATTCATCACTAGGAACATGGTCAAAACCTTAGAGTTCTTG CACCTTGCACCAGAGGGTAGCCAAAGAGTTCAGGCTTTCTTGGAGAAAGCAGCAGATGCACTTGTTGAAGGCGGAAGGATGGGAATCTTCACACCTATGT ACTTTTTCCTCGCTCGGAAGCCTCTTTTGTAG
AA sequence Show only first row Show all	>Potri.016G056000.1 pacid=42810298 polypeptide=Potri.016G056002.1.p locus=Potri.016G056000 ID=Potri.016G056000.1.v4.1 annot-version=v4.1 MSNCGAFYLASNVGGKIEKTQVKSAVKKYEKYHVGGDDEEREANYTDMVNKYYDLVTSFYEYGWGESFHFAPRWKWESLRESIKRHGQLGLQKGQKVLDV GCGIGGPLREIARFSGTLITGVNNNEYQISRGEELNRMAGVDKTCNYVKVGFMTMQADFMKMPFSDNTFDAIFAIEATCHAPDVRDCYKEIYRVLKPGQC FAAYEWCITESFDPLNQEHQRIKINYAFGNREKLSLAMGECLEALQLAGFEVVWEKDVAVASPLPWYFPLDKNQFTLSSFRVTAVGRFITRNMVKTLEFL HLAPEGSQRVQAFLEKAADALVEGGRMGIFTPMYFFLARKPLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13710		CPH, SMT1	CEPHALOPOD, sterol methyltrans...		Potri.016G056000 [exp]	0	1
AT2G26790			Pentatricopeptide repeat (PPR)...		Potri.010G243002 [exp]	5.47	0.8283
AT5G47940			unknown protein		Potri.009G060000 [exp]	10.81	0.7808
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G046200 [exp]	15.29	0.7662
AT4G08210			Pentatricopeptide repeat (PPR-...		Potri.002G087400 [exp]	20.73	0.8166
					Potri.002G262601 [exp]	22.49	0.7534
AT3G14470			NB-ARC domain-containing disea...		Potri.004G170232 [exp]	27.94	0.7735
AT1G56690			Pentatricopeptide repeat (PPR)...		Potri.013G005400 [exp]	29.08	0.7864
					Potri.002G124250 [exp]	29.79	0.7704
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Potri.006G205600 [exp]	34.94	0.7341
AT4G38440		IYO	MINIYO, unknown protein		Potri.009G139900 [exp]	36.37	0.7834

Compare expression of checked genes

Potri.016G056000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.