Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-VLN2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41740 1249 / 0 ATVLN2, VLN2 villin 2 (.1) AT3G57410 1225 / 0 ATVLN3, VLN3 villin 3 (.1) AT4G30160 803 / 0 ATVLN4, VLN4 villin 4 (.1.2) AT5G57320 783 / 0 VLN5 villin 5, villin, putative (.1) AT2G29890 593 / 0 ATVLN1, VLN1 villin 1, villin-like 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G050200 [exp] 1427 / 0 AT2G41740 1340 / 0.0 villin 2 (.1) Potri.018G089700 [exp] 796 / 0 AT4G30160 1464 / 0.0 villin 4 (.1.2) Potri.006G165300 [exp] 792 / 0 AT4G30160 1507 / 0.0 villin 4 (.1.2) Potri.009G045000 [exp] 632 / 0 AT2G29890 1101 / 0.0 villin 1, villin-like 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035450 [exp] 1298 / 0 AT2G41740 1402 / 0.0 villin 2 (.1) Lus10031066 [exp] 1216 / 0 AT2G41740 1320 / 0.0 villin 2 (.1) Lus10015333 [exp] 757 / 0 AT4G30160 1395 / 0.0 villin 4 (.1.2) Lus10005861 [exp] 645 / 0 AT2G29890 1049 / 0.0 villin 1, villin-like 1 (.1.2.3) Lus10025461 [exp] 388 / 4e-122 AT4G30160 959 / 0.0 villin 4 (.1.2) Lus10015332 [exp] 82 / 2e-18 AT4G30160 100 / 4e-26 villin 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0092 [poplar] [flax] ADF PF00626 [poplar] [flax] Gelsolin Gelsolin repeat
Representative CDS sequence Show only first row Show all	>Potri.016G056200.7 pacid=42809163 polypeptide=Potri.016G056201.1.p locus=Potri.016G056200 ID=Potri.016G056200.7.v4.1 annot-version=v4.1 ATGTCTAGCTCTGCAAAAGCTTTGGATCCTGCATTTCAGGGAGTGGGCCAGAGACCAGGGACTGAAATTTGGCGAATCGAGAATTTTCAGCCAGTTCCAC TGCCAAAATCTGATCATGGAAAATTCTACATGGGGGATTCTTACATTGTTTTGCAGACAACCACTGGCAAGGGAGGTGCTTATCTGTACGATATCCACTT CTGGATTGGAAAAGATACTAGTCAGGATGAAGCTGGAACAGCAGCTATCAAAACTGTCGAACTAGATGCAGTTCTTGGAGGACGTGCAGTGCAGCACAGG GAACTTCAAGGACATGAATCTGACAAATTTTTGTCATACTTCAAACCTTGTATTATACCGTTAGAGGGAGGTGTTGCAACTGGGTTTAAAAAAGTCGAGG AGGAAGCATTTGAAATACGATTGTATGTATGTAGAGGGAAACGCGTTGTCAGATTGAAGCAGGTTCCTTTCGCCCGGTCATCATTAAATCATGATGATGT TTTTATCTTGGATACTGAGAAAAAAATCTATCAATTCAATGGCGCAAACTCTAATATCCAGGAAAGAGGCAAGGCTTTGGAAGTGATTCAGTTTTTGAAA GAAAAGTATCATGAAGGAACATGCGATGTTGCAATTGTTGATGATGGGAAATTAGACACCGAGTCAGACTCTGGTGAATTCTGGGTCCTGTTTGGTGGTT TTGCTCCAATTGGCAAAAAGGTTGCCAACGAAGATGACATTATCCCAGAGACAACTCCAGCCAAACTTTATAGTATTACTGATGGTGAGGTGAAGATTGT AGAAGGCGAGCTGTCCAAAGGATTGTTAGAAAACAATAAATGTTATCTCCTTGACTGTGGTGCTGAGATATTTGTTTGGGTTGGTCGTTTAACACAAGTG GAGGAGAGAAAAGCTGCCAGTCAGGCTGCTGAGGAATTTGTTGCAAGCCAAAACAGGCCAAAAACTACTCGATTAACCCGGCTGATTCAAGGTTATGAGA CACGTTCATTCAAGACAAACTTTGATTCTTGGCCTGCTGGATCTGCAGCTCCTGGTGCTGAAGAGGGAAGAGGGAAAGTTGCAGCTTTGCTGAAGCAACA AGGTGTTGGTCTCAAGGGTATGACAAAAAGTGCTCCTGTAAATGAGGAAGTACCACCTTTGCTTGAAGGAGGTGGAAAGATGGAGGTATGGTGCATTAAT GGAAGTTCTAAGACTCCATTGCCAAAGGAGGATGTTGGTAAATTTTATAGTGGAGATTGCTACATCATTCTCTATACATATCACTCTGGTGATAGGAAAG AAGACTATCTTCTCTGCTGTTGGTTTGGAAATGATAGCTCAGAGGAGGACCAGAAGATGGCTGCTCGGCTGGCTAATACAATGTCCAACTCATTAAAGGG CAGGCCTGTACAGGGTCGTATTTTTCAAGGTAAGGAACCTCCACAATTCGTTGCACTTTTTCAGCCTATAGTGATCCTCAAGGGTGGTCTGAGCTCTGGT TACAAGAAAAGCATAGCAGAGAAAGGATTGTCGGATGAAACTTACACAGCAGATTCTGTTGCACTCTTTCGGATATCGGGAACTTCAGTTCATAATGATA AGGCAGTGCAAGTGGATGCGGTGGCAACGTCATTGAACTCTGCTGAGTGCTTCCTTCTGCAATCTGGCTCATCAATTTTCACCTGGCATGGGAATCAAAG CACCTTTGAGCAGCAGCAGTTAGCTGCAAAAATTGCTGAATTTTTGAAGCCAGGAGTTGCTTTGAAACATGCTAAAGAAGGAACTGAAAGCTCAGCCTTT TGGTTTGCCCTTGGAGGCAAACAAAGTTACACCAGCAAAAAGTTTTCTCCAGAAACTGTCAGAGATCCTCACTTGTTCACATTCTCCTTTAATAAAGGGA AATTTCAGGTCGAGGAAGTTTACAACTTCTCTCAAGATGATTTGTTGACTGAGGATATCTTGATACTTGATACACATGCAGAAGTGTTTGTTTGGGTTGG CCAATATGTAGACCCCAAAGAAAAGCAAAATGTTTTTGACATTGGCCAGAAATACATCGAGATGGCTGTGTCTCTGGATGGTTTGTCTCCAAATGTACCA CTGTATAAAGTTACTGAAGGAAATGAACCATCATTCTTCACAACATACTTTTCATGGGATCTCACAAAAGCCACTGTTCAAGGAAACTCATTCCAAAAGA AGGCCGCACTACTTTTTGGGCTAGGACATCATGTTGTGGAGGAAAGGTCCAATGGAAATCAAGGAGGACCGACCCAAAGGGCTTCAGCTTTAGCTGCCTT ATCTTCTGCTTTCAACCCATCATCTGGGAAGTCATCACTTCTGGTCCAACGGGTCAAATCAAGGAGGAACAACACAGAGAGCTTCTGCTTTAGCTGCCTT ATCCTCTGCATTCAATTCATCCCCGGGATCGAAAACTACTGCTTCGAGGCCATCTGGAACCGGTCAGGGATCACAGAGAAGAGCAGCTGTTGCTGCTCTT TCATCAGTTCTTACTGCTGA
AA sequence Show only first row Show all	>Potri.016G056200.7 pacid=42809163 polypeptide=Potri.016G056201.1.p locus=Potri.016G056200 ID=Potri.016G056200.7.v4.1 annot-version=v4.1 MSSSAKALDPAFQGVGQRPGTEIWRIENFQPVPLPKSDHGKFYMGDSYIVLQTTTGKGGAYLYDIHFWIGKDTSQDEAGTAAIKTVELDAVLGGRAVQHR ELQGHESDKFLSYFKPCIIPLEGGVATGFKKVEEEAFEIRLYVCRGKRVVRLKQVPFARSSLNHDDVFILDTEKKIYQFNGANSNIQERGKALEVIQFLK EKYHEGTCDVAIVDDGKLDTESDSGEFWVLFGGFAPIGKKVANEDDIIPETTPAKLYSITDGEVKIVEGELSKGLLENNKCYLLDCGAEIFVWVGRLTQV EERKAASQAAEEFVASQNRPKTTRLTRLIQGYETRSFKTNFDSWPAGSAAPGAEEGRGKVAALLKQQGVGLKGMTKSAPVNEEVPPLLEGGGKMEVWCIN GSSKTPLPKEDVGKFYSGDCYIILYTYHSGDRKEDYLLCCWFGNDSSEEDQKMAARLANTMSNSLKGRPVQGRIFQGKEPPQFVALFQPIVILKGGLSSG YKKSIAEKGLSDETYTADSVALFRISGTSVHNDKAVQVDAVATSLNSAECFLLQSGSSIFTWHGNQSTFEQQQLAAKIAEFLKPGVALKHAKEGTESSAF WFALGGKQSYTSKKFSPETVRDPHLFTFSFNKGKFQVEEVYNFSQDDLLTEDILILDTHAEVFVWVGQYVDPKEKQNVFDIGQKYIEMAVSLDGLSPNVP LYKVTEGNEPSFFTTYFSWDLTKATVQGNSFQKKAALLFGLGHHVVEERSNGNQGGPTQRASALAALSSAFNPSSGKSSLLVQRVKSRRNNTESFCFSCL ILCIQFIPGIENYCFEAIWNRSGITEKSSCCCSFISSYC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41740		ATVLN2, VLN2	villin 2 (.1)		Potri.016G056200 [exp]	0	1	Pt-VLN2.2
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Potri.010G241800 [exp]	6.48	0.7209
AT1G74030		ENO1	enolase 1 (.1)		Potri.012G057500 [exp]	7.74	0.7031
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Potri.008G014400 [exp]	8.36	0.7545
AT5G49830		EXO84B	exocyst complex component 84B ...		Potri.010G249900 [exp]	10.24	0.7385
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Potri.014G014700 [exp]	28.01	0.7212	Pt-ECA3.3
AT3G23980		KOS1, BLI	KOLD SENSITIV 1, BLISTER (.1)		Potri.008G174800 [exp]	34.64	0.6839
AT5G10020			Leucine-rich receptor-like pro...		Potri.007G082800 [exp]	37.50	0.6813
AT2G43290		MSS3	multicopy suppressors of snf4 ...		Potri.007G128600 [exp]	38.72	0.6672
AT1G12470			zinc ion binding (.1)		Potri.013G147600 [exp]	38.88	0.6953
AT3G09730			unknown protein		Potri.006G130600 [exp]	41.42	0.6469

Compare expression of checked genes

Potri.016G056200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.