Plant FIBer expression Database

Potri.016G056300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G57400 343 / 5e-113 unknown protein
AT5G52500 270 / 3e-86 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G050100
[exp]
747 / 0 AT3G57400 349 / 3e-115 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018074
[exp]
356 / 8e-117 AT3G57400 290 / 1e-91 unknown protein
Lus10042066
[exp]
171 / 4e-50 AT3G57400 159 / 3e-46 unknown protein
Lus10042067
[exp]
171 / 1e-48 AT3G57400 107 / 4e-26 unknown protein
Lus10035449
[exp]
46 / 3e-06 ND /
PFAM info
Representative CDS sequence
>Potri.016G056300.1 pacid=42809564 polypeptide=Potri.016G056300.1.p locus=Potri.016G056300 ID=Potri.016G056300.1.v4.1 annot-version=v4.1
ATGGGAATCATGGCGAAGGCCAAAAGCAGCAAAAACAACAGTGAAAATTGGGGCATGGAGGGCTTGCTCCTAGTCTTCTTCCCTGAAGACACCTCCTCCA
CCACCGCCGACGCCGACGCCACTGCTCCATTCTGCCCCTCCTCTCCATCAACCCCATCACTGGCTACTCCCAACAGTAACTCATCAAAAATAATTAAAAG
GACCAACTCAAACAACCCCATAATCACGAAGACTCAATCCACCATCTCGATTTGTGCTCTTTTACTCTTCCTCACCCTCCTTCTCTTCACTCTCTCAACT
TTTGAACCCGCAATCCCCAACCCGTCCACCACCATTAGTATCAACCAAACCCCACGTAGATTCTTGTCTCAAAACAAGCTTAAACCCACAAAAACCAGTT
ACTTCTCTATGTTTTCAAGAACATTTTGGCCAAAAGATGATAAAAGAAGTGAAAAGTTCCGTTCTTTATATGCTTTACAAGGAATGGGCAAGCTTTACAG
GCGTGGGACTAGAGCAATGAGTGATCTTGTTGTTGCTCATGTAATGGAAGAGACTAATGAAGCTGAATTTAGACTCTTTTTAAGAGTCTTGCATCGGTCA
GGTCTCACAGCAAGAGCTGATGCTGTCTTTGTCTTTCCTTCCTCTTTATTCGCTACAAGATTTGAATCATTGATTCAAGAAGAGAATGACTCGTTCTTGA
AACTTGTTAATTACTACAAACAATTGAATAGAACGAGTCAGGACTCCGTGTCGGCGTCGAGTTTTGACGTGAGTCAGTTTTTGAAGAGTGGGAAGAAGCA
GATGGGTGAGCCTCTGTGGGGAAAGAGAATTAGAGTTGATGGCAATGGCAATTCTAGTGAGTCGGGGGAGGGCGAGGGTGAGTTGACTCTGTTGAGTTAT
GGCTCAGTGGTGGGTTTTGACGCGAGTGAGCTTGACCCGGAGAATTCACTTGCGGGGTTTCTAGACTATGTGCCAATGAGTTTGAGAAGATGGGCTTGTT
ATCCAATGTTACTCGGTCGAGTTAGGAGAAACTTTAAGCATGTAATGTTAGTGGATGTCAAAAAAGTGGTTTTTTTCAGAGACCCACTCGGCCAAGTCAG
GAACCGGAGTCCAGAGTCGGTGTATATTAGAATAAAACAAGAAAGTTGTTCGAACAAGCATCACAGGAAAAACTCGGAGCAAACTCAGTCCAATTGTCAA
GTTAACTCAGCGATCTTGATGGGTGGAGCACGGGGAATTCGGAGATTGTCTAGCGCAATGTTAACTGAGATCGCTCGAGCAGCCATGCAACACAAGAAGA
AGAGCTCAGTTACTGAGTCAGGGATATTAACTCAACTCGTCGGCAAGGTGCATATATTGAAGATTATTGACTTGATTACAGCAACCGAGTCAATCCCGGG
TATGAGTTCCCTCACTGGCTCAAACTCGTCTTTGTGGAATAATTATAGTATAATCCAACTCGGGGTTAATAGTAATTATGATATGATTAACTCAATTATT
ACAAGGCAAATATGTTCATGGGAAGTAGAATCGTCTGTTTATAACGATTGTTAA
AA sequence
>Potri.016G056300.1 pacid=42809564 polypeptide=Potri.016G056300.1.p locus=Potri.016G056300 ID=Potri.016G056300.1.v4.1 annot-version=v4.1
MGIMAKAKSSKNNSENWGMEGLLLVFFPEDTSSTTADADATAPFCPSSPSTPSLATPNSNSSKIIKRTNSNNPIITKTQSTISICALLLFLTLLLFTLST
FEPAIPNPSTTISINQTPRRFLSQNKLKPTKTSYFSMFSRTFWPKDDKRSEKFRSLYALQGMGKLYRRGTRAMSDLVVAHVMEETNEAEFRLFLRVLHRS
GLTARADAVFVFPSSLFATRFESLIQEENDSFLKLVNYYKQLNRTSQDSVSASSFDVSQFLKSGKKQMGEPLWGKRIRVDGNGNSSESGEGEGELTLLSY
GSVVGFDASELDPENSLAGFLDYVPMSLRRWACYPMLLGRVRRNFKHVMLVDVKKVVFFRDPLGQVRNRSPESVYIRIKQESCSNKHHRKNSEQTQSNCQ
VNSAILMGGARGIRRLSSAMLTEIARAAMQHKKKSSVTESGILTQLVGKVHILKIIDLITATESIPGMSSLTGSNSSLWNNYSIIQLGVNSNYDMINSII
TRQICSWEVESSVYNDC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G57400 unknown protein Potri.016G056300
[exp]
0 1
AT5G43700 AUX_IAA IAA4, ATAUX2-11 indole-3-acetic acid inducible... Potri.008G161100
[exp]
2.00 0.6992
AT5G10290 leucine-rich repeat transmembr... Potri.007G094500
[exp]
4.89 0.7378
AT4G30210 AR2, ATR2 P450 reductase 2 (.1.2) Potri.018G092100
[exp]
10.09 0.7244 PSC450.1
AT5G25830 GATA GATA12 GATA transcription factor 12 (... Potri.013G059600
[exp]
18.00 0.7180
AT1G17420 ATLOX3, LOX3 Arabidopsis thaliana lipoxygen... Potri.003G067600
[exp]
23.55 0.6935 Pt-LOX3.2
AT1G24530 Transducin/WD40 repeat-like su... Potri.010G050900
[exp]
41.02 0.6653
Potri.005G182850
[exp]
48.37 0.6039
AT1G01060 MYB LHY, LHY1 LATE ELONGATED HYPOCOTYL 1, LA... Potri.014G106800
[exp]
50.51 0.6299
AT5G06980 unknown protein Potri.001G031800
[exp]
61.57 0.6501
AT2G40330 RCAR9, PYL6 regulatory components of ABA r... Potri.010G183900
[exp]
66.53 0.6458

Potri.016G056300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.