Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21090 739 / 0 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT1G51500 704 / 0 AtABCG12, WBC12, ABCG12, D3, CER5, ATWBC12 ECERIFERUM 5, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, ATP-binding cassette G12, ABC-2 type transporter family protein (.1) AT1G51460 670 / 0 ABCG13 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) AT1G17840 583 / 0 AtABCG11, WBC11, DSO, ABCG11 ,COF1, ATWBC11 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) AT2G28070 332 / 7e-104 ABCG3 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) AT2G01320 261 / 3e-77 ABCG7 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) AT3G55090 218 / 2e-61 ABCG16 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) AT3G52310 214 / 1e-59 ABCG27 ATP-binding cassette G27, ABC-2 type transporter family protein (.1) AT5G06530 213 / 1e-59 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT2G37360 213 / 2e-59 ABCG2 ATP-binding cassette G2, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G056600 [exp] 767 / 0 AT3G21090 744 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.001G255800 [exp] 753 / 0 AT3G21090 1038 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.009G051200 [exp] 744 / 0 AT3G21090 1008 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.009G051300 [exp] 743 / 0 AT3G21090 943 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.001G255900 [exp] 723 / 0 AT3G21090 929 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.017G155300 [exp] 588 / 0 AT1G17840 1174 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.018G152600 [exp] 585 / 0 AT1G17840 1152 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.005G073050 [exp] 494 / 2e-166 AT1G17840 659 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.005G073100 [exp] 493 / 5e-166 AT1G17840 661 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009959 [exp] 681 / 0 AT3G21090 860 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10027354 [exp] 669 / 0 AT3G21090 868 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009961 [exp] 665 / 0 AT3G21090 971 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10035445 [exp] 645 / 0 AT3G21090 667 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10031063 [exp] 640 / 0 AT3G21090 659 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009960 [exp] 634 / 0 AT3G21090 855 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10000339 [exp] 618 / 0 AT1G51460 837 / 0.0 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) Lus10027353 [exp] 563 / 0 AT3G21090 661 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10040644 [exp] 535 / 0 AT1G17840 1120 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10023154 [exp] 448 / 6e-149 AT1G17840 613 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0181 [poplar] [flax] ABC-2 PF01061 [poplar] [flax] ABC2_membrane ABC-2 type transporter
Representative CDS sequence Show only first row Show all	>Potri.016G056700.4 pacid=42808964 polypeptide=Potri.016G056700.4.p locus=Potri.016G056700 ID=Potri.016G056700.4.v4.1 annot-version=v4.1 ATGTGCTTGGTATGGGAAAATCTCACGGTGGAGCTACCTAGCATGATCACGAGTGGTTCGACGAGGAAATTGCTAAGTAATCTTAGTGGTTATGCTGAAC CAGGCCATATCATGGCTATCATGGGACCTTCTGGGTCCGGCAAATCCACGCTACTTGACTCATTGGCTGGAAGACTTTCTTCAAATGTTAAAATGAGTGG AAAAGTCCTTATCAATGCCAAGAGAAGCAGCATAGACTGCAGAGATATTTCTTATGTTACTCAAGAAGATTTTTTCTTGGGAACCCTCACAGTCAGAGAG ACAATTACTTACTCGGCTCACTTGAGGCTTCCTCGGACAATGACTAAAGAGGAGATAGATAGTGTCGTTGACAACACAATAATGGAGATGGGTCTTCAAG ATTGCGCTGATTCTAAGATTGGAAATTGGCATTTAAGGGGCATAAGCACTGGTGAAAAGAAGAGACTTAGCATTAGTGTTGAAATTTTAACACGTCCACA TATTATGCTCCTTGATGAGCCTACTACTGGCCTGGATAGTGCTTCAGCTTTCTTTGTGATAAGAGCTCTTAACAGCATTGCTTATGATGGAAAGATTGTC ATTTGTTCCCTTCATCAGCCAAGTAGCGATGTTTTCAATCTTTTAGATGATTTGCTGCTTCTCTCAGGAGGAGAAACTGTCTATTTCGGAGAAGCGAAAA TGGCAGTGAAGTTTTTCGCTGAAGCCGGATTCCCTTGTCCAACAAAAAGAAATCCTTCTGATCACTTCCTGCGTTGTATAAATTTGGACTTTGATATCAT TGCCGAAGCTCTTTTGCGATATCAGAACATCTGCGCAATCCCAGAATCGTCAAGTTATTCGGTAAAGATGAAAACTGCGGAGATCAGAGAAACACTTATT GAGAAGTACAAGTGTTCTGAGTTTTCAATTAATACAAGAAGAAGAATTCAAGAAATCTCAGAAGAACCTGCCATTGAACCGAACAAGAGAATCAATGCTA GCTCTTGGAATCAACTTTCTACGCTGACACGCCGATCTTTTGTTAATATGCACAGAGACATAGGCTATTATTGGCTGAGGATGGTTCTCTATGTCTTAAT ATCATTAAGCATTGGTGTCCTCTTTTTCAACAGTGGAACGGATCGTGAAACGATTTTGGAAAGAGCAAAGTGTGTGTGTTTTGTTTATGGCTTCATGATT TGTTTGTCCTGTGGAGGCTTACCATTTTTCATTGAAGAAATGAAGGTGTTTCGTCGAGAAAGGTTGGGTGGAGATTACGGAGAGGCTGTGCTTGTGCTGT CGAACTTCTTCTCATCATTCCCATTCTTGCTTGCCATATCTCTTCTTTCAGGAACAATAATCTATTACATGGTGAAATTTCATCCAGGATTTCCTCACTA TGCCTTTTTCTGCATCAATCTCTTTTGCTGTCTCTCTGTCATAGAAACTTGTATGATGATTGTTGCATCTCTGGTGCCTAATGTCTTGATGGGCATTGGT ATTGGAACCGGTGTAATTGTCTTTATGATGATGGCATCTGAGATCTTCAGACCTGTACCAGACCTTCCAAAATTCTTCTGGCGTTACCCAGTCTCCTACA TCAGTTTCGCGACATGGGCAATCCAGGGTGAGTACAAGAACGAAATGATTGGGCTCGAGTTTGATCCTTTGATGCCAGGAAACTCAAAGGTGAAGGGAGA AACAGTCCTACAAACAGTTTTCGGAGTTCCCCTGAGTCATTCCAAATGGTGGGATTTGACTGCACTGTTATTCCTATTACTAACCCATCGACTAGTCTTG TACATGGTACTTAAGTACAAGGATAGAATAGCTTCAAAATTTCCCAGACCACATGCCAATAAAACTGTCCAACACCTTGCAAGGAGAGTTTCGAAAGTGG GCGAAAGGCTTTCTTCCTCGAAGAGACACCATCCTCAGCATCCATTATCTTCTCAAGAAGGTCTCAGGTCTCCAATACCTTAG
AA sequence Show only first row Show all	>Potri.016G056700.4 pacid=42808964 polypeptide=Potri.016G056700.4.p locus=Potri.016G056700 ID=Potri.016G056700.4.v4.1 annot-version=v4.1 MCLVWENLTVELPSMITSGSTRKLLSNLSGYAEPGHIMAIMGPSGSGKSTLLDSLAGRLSSNVKMSGKVLINAKRSSIDCRDISYVTQEDFFLGTLTVRE TITYSAHLRLPRTMTKEEIDSVVDNTIMEMGLQDCADSKIGNWHLRGISTGEKKRLSISVEILTRPHIMLLDEPTTGLDSASAFFVIRALNSIAYDGKIV ICSLHQPSSDVFNLLDDLLLLSGGETVYFGEAKMAVKFFAEAGFPCPTKRNPSDHFLRCINLDFDIIAEALLRYQNICAIPESSSYSVKMKTAEIRETLI EKYKCSEFSINTRRRIQEISEEPAIEPNKRINASSWNQLSTLTRRSFVNMHRDIGYYWLRMVLYVLISLSIGVLFFNSGTDRETILERAKCVCFVYGFMI CLSCGGLPFFIEEMKVFRRERLGGDYGEAVLVLSNFFSSFPFLLAISLLSGTIIYYMVKFHPGFPHYAFFCINLFCCLSVIETCMMIVASLVPNVLMGIG IGTGVIVFMMMASEIFRPVPDLPKFFWRYPVSYISFATWAIQGEYKNEMIGLEFDPLMPGNSKVKGETVLQTVFGVPLSHSKWWDLTALLFLLLTHRLVL YMVLKYKDRIASKFPRPHANKTVQHLARRVSKVGERLSSSKRHHPQHPLSSQEGLRSPIP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.016G056700 [exp]	0	1
AT4G31980			unknown protein		Potri.003G206201 [exp]	7.34	0.9580
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Potri.001G469000 [exp]	9.79	0.9516
AT5G60740		ABCG28	ATP-binding cassette G28, ABC ...		Potri.001G058900 [exp]	10.19	0.9539
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.017G009000 [exp]	11.61	0.9540
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Potri.001G191600 [exp]	19.26	0.9514
AT3G01390		AVMA10, VMA10	vacuolar membrane ATPase 10 (....		Potri.013G108300 [exp]	19.62	0.9446
AT3G59530		LAP3	LESS ADHERENT POLLEN 3, Calciu...		Potri.007G130700 [exp]	20.49	0.9356
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Potri.002G192600 [exp]	20.73	0.9537
AT1G68480	C2H2ZnF	JAG	JAGGED, C2H2 and C2HC zinc fin...		Potri.008G121200 [exp]	25.45	0.9467
AT5G20240	MADS	PI, PISTILLATA	PISTILLATA, K-box region and M...		Potri.002G079000 [exp]	26.98	0.9437	Pt-MADS2.1

Compare expression of checked genes

Potri.016G056700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.