Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41660 202 / 6e-64 MIZ1 mizu-kussei 1, Protein of unknown function, DUF617 (.1) AT3G25640 174 / 2e-53 Protein of unknown function, DUF617 (.1) AT5G23100 173 / 7e-53 Protein of unknown function, DUF617 (.1) AT2G21990 167 / 4e-51 Protein of unknown function, DUF617 (.1) AT4G39610 165 / 5e-50 Protein of unknown function, DUF617 (.1) AT5G06990 156 / 1e-46 Protein of unknown function, DUF617 (.1) AT2G37880 140 / 2e-40 Protein of unknown function, DUF617 (.1) AT1G76610 135 / 1e-38 Protein of unknown function, DUF617 (.1) AT5G42680 135 / 1e-38 Protein of unknown function, DUF617 (.1.2) AT1G21050 132 / 1e-37 Protein of unknown function, DUF617 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G048800 [exp] 428 / 2e-153 AT2G41660 241 / 3e-79 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Potri.012G058300 [exp] 181 / 2e-56 AT5G23100 261 / 7e-88 Protein of unknown function, DUF617 (.1) Potri.015G053000 [exp] 177 / 5e-55 AT5G23100 293 / 3e-100 Protein of unknown function, DUF617 (.1) Potri.010G131600 [exp] 177 / 6e-55 AT3G25640 249 / 1e-82 Protein of unknown function, DUF617 (.1) Potri.001G031900 [exp] 171 / 2e-52 AT5G06990 275 / 6e-93 Protein of unknown function, DUF617 (.1) Potri.005G084000 [exp] 169 / 8e-52 AT2G21990 327 / 4e-114 Protein of unknown function, DUF617 (.1) Potri.008G114500 [exp] 169 / 1e-51 AT3G25640 228 / 2e-74 Protein of unknown function, DUF617 (.1) Potri.003G193700 [exp] 166 / 1e-50 AT5G06990 328 / 6e-114 Protein of unknown function, DUF617 (.1) Potri.002G002000 [exp] 150 / 2e-44 AT1G21050 236 / 1e-78 Protein of unknown function, DUF617 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031059 [exp] 219 / 2e-70 AT2G41660 258 / 4e-85 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10035443 [exp] 216 / 4e-69 AT2G41660 248 / 4e-81 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10035847 [exp] 177 / 6e-54 AT2G21990 306 / 1e-104 Protein of unknown function, DUF617 (.1) Lus10000863 [exp] 172 / 1e-52 AT5G23100 276 / 3e-93 Protein of unknown function, DUF617 (.1) Lus10036630 [exp] 173 / 2e-52 AT4G39610 308 / 5e-105 Protein of unknown function, DUF617 (.1) Lus10019166 [exp] 171 / 4e-52 AT3G25640 258 / 2e-86 Protein of unknown function, DUF617 (.1) Lus10027241 [exp] 165 / 9e-50 AT5G23100 270 / 1e-90 Protein of unknown function, DUF617 (.1) Lus10034386 [exp] 165 / 1e-49 AT3G25640 268 / 3e-90 Protein of unknown function, DUF617 (.1) Lus10009615 [exp] 158 / 2e-47 AT5G23100 258 / 4e-86 Protein of unknown function, DUF617 (.1) Lus10042046 [exp] 144 / 9e-42 AT2G41660 170 / 3e-51 mizu-kussei 1, Protein of unknown function, DUF617 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04759 [poplar] [flax] DUF617 Protein of unknown function, DUF617
Representative CDS sequence Show only first row Show all	>Potri.016G056800.1 pacid=42809469 polypeptide=Potri.016G056800.1.p locus=Potri.016G056800 ID=Potri.016G056800.1.v4.1 annot-version=v4.1 ATGAAACACCAACAGATTAGCCTCGAAAGAAATAGTAGCTGCAGCAGAAGCACAGGAAAAATAATCCCATCAAACTACATGAGATCAATCCCTGAACAAG AAGATCATCACTCTCAAATCTCTGTACGACGCCTTAATAATACCAAAATCAATTCAAGGTTTACTTGTTTTTTTAGTTCAATTTTCAAGATTCTGTCTTT CCCAAATATACTCTTCCCTGCAGCCTGTAAATGGCTATCAATCCCAACTCAGAACCTGTCCATAACCCCTTCTCTTGGCCGGAAAGTCACTGGAACCATC TTTGGAAACCGCCATGGCCATGTCAACTTCGCGGTCCAGGATGACCCGGTTTCTGAACCGGTCTTATTACTCGAGCTTCCGATGTCTACGGCAATGTTAG TTAAGGAAATGTCATCAGGTTTGGTCAGGATCGCCCTGGAATGTGATAAGGTTCGTGCTCCTCAGGTTCAGACAGGCCGGCAGGGGAAGCTGTTTAATGA ACCAACATGGACTATGTATTGTAATGGAAGGAAGTGTGGGTACGCCGTGTCGCGGAGGTGCACATATTCTGATCAGTACGTGTTTGAAACCGTTAAGAGT GTTTCGGCTGGCGCTGGGGTTATTCCGGTGATAGAGGATGGGCATAAGAGCGACGGTGTAGACGGTGAGTTGATGTATATGAGGGCTAAGTTTGAGCGAG TTGTAGGGAGTCGTGACTCAGAGGCATATTATATGATGAATCCTGAAGGAAATGGAGTGCCTGAACTCAGTATATTTTTACTAAGAATATAA
AA sequence Show only first row Show all	>Potri.016G056800.1 pacid=42809469 polypeptide=Potri.016G056800.1.p locus=Potri.016G056800 ID=Potri.016G056800.1.v4.1 annot-version=v4.1 MKHQQISLERNSSCSRSTGKIIPSNYMRSIPEQEDHHSQISVRRLNNTKINSRFTCFFSSIFKILSFPNILFPAACKWLSIPTQNLSITPSLGRKVTGTI FGNRHGHVNFAVQDDPVSEPVLLLELPMSTAMLVKEMSSGLVRIALECDKVRAPQVQTGRQGKLFNEPTWTMYCNGRKCGYAVSRRCTYSDQYVFETVKS VSAGAGVIPVIEDGHKSDGVDGELMYMRAKFERVVGSRDSEAYYMMNPEGNGVPELSIFLLRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41660		MIZ1	mizu-kussei 1, Protein of unkn...		Potri.016G056800 [exp]	0	1
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Potri.014G002500 [exp]	1.00	0.9264
AT4G32810		MAX4, CCD8, ATC...	MORE AXILLARY BRANCHING 4, car...		Potri.006G238500 [exp]	9.89	0.8728
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Potri.017G135400 [exp]	10.39	0.9098	Pt-SKOR.4
AT2G41660		MIZ1	mizu-kussei 1, Protein of unkn...		Potri.006G048800 [exp]	21.77	0.8148
AT2G41480			Peroxidase superfamily protein...		Potri.018G131600 [exp]	21.84	0.8147
AT3G06880			Transducin/WD40 repeat-like su...		Potri.005G240100 [exp]	21.84	0.9049
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.005G013600 [exp]	22.69	0.8841
AT2G24130			Leucine-rich receptor-like pro...		Potri.003G184100 [exp]	23.06	0.8247
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Potri.002G129700 [exp]	24.61	0.8337	KO,GA3.1
AT3G51630		ATWNK5, ZIK1, W...	with no lysine (K) kinase 5 (....		Potri.016G134600 [exp]	26.90	0.8076

Compare expression of checked genes

Potri.016G056800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.