Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41640 585 / 0 Glycosyltransferase family 61 protein (.1.2) AT3G57380 568 / 0 Glycosyltransferase family 61 protein (.1) AT3G10320 535 / 0 Glycosyltransferase family 61 protein (.1) AT2G03370 274 / 3e-86 Glycosyltransferase family 61 protein (.1) AT2G03360 271 / 3e-85 Glycosyltransferase family 61 protein (.1.2) AT3G18180 223 / 1e-66 Glycosyltransferase family 61 protein (.1) AT3G18170 212 / 2e-63 Glycosyltransferase family 61 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G048500 [exp] 828 / 0 AT2G41640 604 / 0.0 Glycosyltransferase family 61 protein (.1.2) Potri.010G162200 [exp] 298 / 2e-95 AT2G03360 407 / 3e-139 Glycosyltransferase family 61 protein (.1.2) Potri.008G092700 [exp] 270 / 6e-85 AT2G03360 377 / 1e-127 Glycosyltransferase family 61 protein (.1.2) Potri.010G162100 [exp] 263 / 7e-82 AT2G03360 371 / 1e-124 Glycosyltransferase family 61 protein (.1.2) Potri.015G042300 [exp] 254 / 1e-77 AT3G18170 438 / 1e-150 Glycosyltransferase family 61 protein (.1) Potri.012G051500 [exp] 249 / 2e-75 AT3G18170 451 / 1e-155 Glycosyltransferase family 61 protein (.1) Potri.015G042200 [exp] 234 / 3e-70 AT3G18180 441 / 3e-151 Glycosyltransferase family 61 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018048 [exp] 601 / 0 AT2G41640 569 / 0.0 Glycosyltransferase family 61 protein (.1.2) Lus10031057 [exp] 588 / 0 AT2G41640 543 / 0.0 Glycosyltransferase family 61 protein (.1.2) Lus10035441 [exp] 580 / 0 AT2G41640 560 / 0.0 Glycosyltransferase family 61 protein (.1.2) Lus10018046 [exp] 567 / 0 AT3G10320 530 / 0.0 Glycosyltransferase family 61 protein (.1) Lus10042043 [exp] 319 / 1e-105 AT3G10320 335 / 1e-112 Glycosyltransferase family 61 protein (.1) Lus10036806 [exp] 258 / 4e-80 AT2G03370 381 / 4e-129 Glycosyltransferase family 61 protein (.1) Lus10036003 [exp] 242 / 3e-73 AT3G18180 360 / 2e-119 Glycosyltransferase family 61 protein (.1) Lus10016707 [exp] 242 / 4e-73 AT3G18180 367 / 3e-122 Glycosyltransferase family 61 protein (.1) Lus10042044 [exp] 232 / 2e-68 AT2G41640 257 / 4e-78 Glycosyltransferase family 61 protein (.1.2) Lus10031058 [exp] 234 / 6e-67 AT3G10310 880 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04577 [poplar] [flax] DUF563 Protein of unknown function (DUF563)
Representative CDS sequence Show only first row Show all	>Potri.016G057000.1 pacid=42810588 polypeptide=Potri.016G057000.1.p locus=Potri.016G057000 ID=Potri.016G057000.1.v4.1 annot-version=v4.1 ATGGTGCACTCCTATAGATATCATGATCAGTTAAAAAAAGGTGATCGTCAACATGTTGAAGAAGAGGAGGTGCTGTTGTCATCTTTGATGTGTGCAGCAA GCTCGGGTTATTTCAATAGGACAAGGCCCAAGCTTTTCTCTCTTGTCATTCTTTCTCTTCTCTCTTGCTGTCTTATTTTATCTCCTCCCTTGTTTTGCTC TTCCTCTACTTCCTCTCTTTCGTATTCTTTTGATGTAGAAAGTGATGGGGTTGCTACTAATGTAAATGCAAAAGCTTATTTGTGCTCTTCGATTTCTAAT GGAACCATATGTTGTGACCGAAGCAGTATGCGTTCTGATGTCTGTGTTATGAAAGGGGATGTAAGAACACATTCTGCCTCTTCTTCGATCTTCCTCTTCA CCTCAAGAAATAACAATTCTGTGATGAACAAGGTTTCGAGTTTAGTTGATAAAGATGAGGAACTCCATCATGAAAAGATCAAACCATACACTCGAAAATG GGAAACGAGTGTGATGGACTCAATTGATGAATTAGGCCTTATTGCAAAGACAGAGAATTCTAGAATTAACCATCATTGCGATGTCATGCATGATGTACCG GCAGTGTTCTTTTCGACTGGAGGCTACACCGGTAATGTTTATCATGAATTCAATGATGGGATTTTGCCTTTGTACATTACATCACAGCATTTCAAGAAGA AGGTTGTGTTTGTTATTCTCGATTATCATAATTGGTGGATCATGAAGTATGGAAACATTCTTTCACTTCTTTCGGATTATCCTGCCATTGATTTTAGTGG AGACAAGAAAACCCATTGCTTTCCTGAAGCTATTGCTGGTCTTAGAATCCATGATGAGCTCACAGTGGATCCTTCACTGATGCAGGAGAATAAAAGCATT GTTGATTTTCGCAATTTTCTAGACCGAGCTTACTGGCCTCGAATTAAAAGTATGATTAAAGGAGAAGAACGAGGAGCTCAAAAAAAACTTGAACTGAAAG CTCATTCATCAAAAAAAAACCTAAAGCAAGTGCATGAAGCCACCTTGAAGAAACCTAAACTGGTAATTTTATCTCGAAATGGATCTAGAGCTATAACTAA TGAGAATTTATTGGTGAAGATGGCTGAAGAAATCGGATTTCGAGTTGAAGTGATGAGGCCTGAACCAACGACAGAACTGGCCAGGATATATCGCGCACTT AATTCAAGTGAAGTTATGATTGGTGTCCATGGTGCTGCCATGACTCATTTTCTGTTTATGAAGCCTGGCTCTGTTTTTATCCAAGTTATTCCTCTAGGAA CAGAATGGGCAGCCGATGCTTATTATGGTGAGCCTGCAAGGAAGCTTGGTTTAAAGTATATTGGCTACCAAATTCTTCCAAGAGAGAGTTCATTGTATGA CAAATACGATAAGAATGATCCTGTTCTTCGAGATCCCAGAAGCGTGTCTGACAAGGGATGGCAATACACAAAGTCGATCTATCTTGATAACCAAAATGTG AGGCTCAATCTTGGAAGATTTCAGAGGAGGTTACTTCGTGCTTACCGTTACTCTATCGCAAAAGTGAATAGTAGATATCATCTCCAATCACAGTAA
AA sequence Show only first row Show all	>Potri.016G057000.1 pacid=42810588 polypeptide=Potri.016G057000.1.p locus=Potri.016G057000 ID=Potri.016G057000.1.v4.1 annot-version=v4.1 MVHSYRYHDQLKKGDRQHVEEEEVLLSSLMCAASSGYFNRTRPKLFSLVILSLLSCCLILSPPLFCSSSTSSLSYSFDVESDGVATNVNAKAYLCSSISN GTICCDRSSMRSDVCVMKGDVRTHSASSSIFLFTSRNNNSVMNKVSSLVDKDEELHHEKIKPYTRKWETSVMDSIDELGLIAKTENSRINHHCDVMHDVP AVFFSTGGYTGNVYHEFNDGILPLYITSQHFKKKVVFVILDYHNWWIMKYGNILSLLSDYPAIDFSGDKKTHCFPEAIAGLRIHDELTVDPSLMQENKSI VDFRNFLDRAYWPRIKSMIKGEERGAQKKLELKAHSSKKNLKQVHEATLKKPKLVILSRNGSRAITNENLLVKMAEEIGFRVEVMRPEPTTELARIYRAL NSSEVMIGVHGAAMTHFLFMKPGSVFIQVIPLGTEWAADAYYGEPARKLGLKYIGYQILPRESSLYDKYDKNDPVLRDPRSVSDKGWQYTKSIYLDNQNV RLNLGRFQRRLLRAYRYSIAKVNSRYHLQSQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41640			Glycosyltransferase family 61 ...		Potri.016G057000 [exp]	0	1
AT3G23360			Protein phosphatase 2C family ...		Potri.010G070100 [exp]	3.87	0.9254
AT1G53920		GLIP5	GDSL-motif lipase 5 (.1)		Potri.018G063901 [exp]	10.95	0.9093
AT1G30260		AGL79	unknown protein		Potri.004G133180 [exp]	17.54	0.8947
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Potri.009G159800 [exp]	19.79	0.8940
AT5G16370		AAE5	acyl activating enzyme 5 (.1)		Potri.019G067800 [exp]	20.78	0.8974
AT2G29150			NAD(P)-binding Rossmann-fold s...		Potri.005G039500 [exp]	22.80	0.8876
AT4G04780		MED21	mediator 21 (.1)		Potri.004G017100 [exp]	24.04	0.8676
AT1G79510			Uncharacterized conserved prot...		Potri.010G173000 [exp]	30.19	0.8888
					Potri.006G100001 [exp]	33.43	0.8133
AT4G13010			Oxidoreductase, zinc-binding d...		Potri.001G391100 [exp]	35.49	0.8058

Compare expression of checked genes

Potri.016G057000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.