Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	TFIIB1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10330 611 / 0 Cyclin-like family protein (.1) AT2G41630 561 / 0 TFIIB transcription factor IIB (.1) AT3G29380 263 / 1e-86 pBRP2 plant-specific TFIIB-related protein 2, Cyclin-like family protein (.1) AT3G57370 170 / 3e-50 Cyclin family protein (.1) AT4G10680 99 / 9e-25 transcription factor IIB (TFIIB) family protein (.1) AT4G36650 99 / 4e-23 ATPBRP plant-specific TFIIB-related protein (.1.2) AT5G39230 50 / 1e-07 TFIIB zinc-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G048400 [exp] 628 / 0 AT3G10330 605 / 0.0 Cyclin-like family protein (.1) Potri.015G067500 [exp] 490 / 3e-176 AT3G10330 499 / 5e-180 Cyclin-like family protein (.1) Potri.017G093100 [exp] 325 / 5e-111 AT3G10330 333 / 1e-114 Cyclin-like family protein (.1) Potri.007G027600 [exp] 96 / 5e-22 AT4G36650 575 / 0.0 plant-specific TFIIB-related protein (.1.2) Potri.009G039100 [exp] 45 / 7e-05 AT3G09360 412 / 7e-134 Cyclin/Brf1-like TBP-binding protein (.1) Potri.001G246100 [exp] 44 / 8e-05 AT3G09360 419 / 8e-140 Cyclin/Brf1-like TBP-binding protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035440 [exp] 596 / 0 AT3G10330 603 / 0.0 Cyclin-like family protein (.1) Lus10016260 [exp] 488 / 3e-175 AT3G10330 499 / 5e-180 Cyclin-like family protein (.1) Lus10031055 [exp] 348 / 7e-121 AT3G10330 355 / 7e-124 Cyclin-like family protein (.1) Lus10031056 [exp] 107 / 2e-29 AT3G10330 109 / 7e-31 Cyclin-like family protein (.1) Lus10024022 [exp] 98 / 1e-22 AT4G36650 610 / 0.0 plant-specific TFIIB-related protein (.1.2) Lus10041732 [exp] 96 / 9e-22 AT4G36650 605 / 0.0 plant-specific TFIIB-related protein (.1.2) Lus10029285 [exp] 70 / 2e-15 AT3G10330 71 / 3e-16 Cyclin-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [poplar] [flax] Cyclin PF00382 [poplar] [flax] TFIIB Transcription factor TFIIB repeat CL0167 [poplar] [flax] Zn_Beta_Ribbon PF08271 [poplar] [flax] TF_Zn_Ribbon TFIIB zinc-binding
Representative CDS sequence Show only first row Show all	>Potri.016G057100.1 pacid=42809327 polypeptide=Potri.016G057100.1.p locus=Potri.016G057100 ID=Potri.016G057100.1.v4.1 annot-version=v4.1 ATGGGGGACGCTTTCTGTTCAGATTGTAAGAGACACACGGAGGTAGTTTTCGACCATTCAGCAGGAGACACAGTATGTTCAGAGTGTGGTCTTGTCTTAG AATCTCACTCGATCGATGAAACATCAGAGTGGAGAACTTTTGCGAATGAATCAGGAGACAATGATCCAGTTCGTGTTGGTGGACCAACTAATCCTTTATT AACAGATGGTGGTCTTTCTACTGTTATTGCTAAACCTAATGGTGCTTCAGGAGAGTTCTTGTCCAGTTCTCTTGGTAGGTGGCAGAATCGTGGATCCAAT CCTGATCGTGGGTTGATTACGGCTTTTAAAACTATTGCTACGATGTCTGATAGGTTGGGCCTTGTTGCAACTATCAAGGATCGGGCCAATGAGATCTACA AGAAGGTGGAAGATCAAAAGTCCAGTAGAGGAAGGAATCAAGATGCTTTATTGGCTGCTTGCCTCTACATTGCTTGTCGACAAGAAGACAAGCCCCGAAC TGTAAAGGAAATTTGCTCTGTCGCCAATGGAGCCACAAAGAAGGAAATTGGCCGAGCAAAAGAATACATAGTGAAACAACTGGGTTTGGAGACTGGTCAG TCCGTGGAGATGGGAACTATACATGCTGGGGATTTTATGAGGCGTTTCTGCTCCAATCTTGGAATGTCTAATCATACAGTTAAAGCTGCCACAGAAGCTG TTAAAACGTCAGAACAGTTTGATATAAGGAGGAGCCCTATATCAATCGCAGCAGCAGTCATCTATATAATTACTCAGCTCTCAGATGACAAGAAGCCTCT TCGAGATATTTCACTAGCAACTGGAGTTGCTGAAGGAACAATCAGAAATTCCTACAAGGATCTTTATCCCCACGTGTCAAAGATTATACCATCATGGTAT GCCAGCGAGGAAGATTTGAAGAACCTTTGCAGTCCTTGA
AA sequence Show only first row Show all	>Potri.016G057100.1 pacid=42809327 polypeptide=Potri.016G057100.1.p locus=Potri.016G057100 ID=Potri.016G057100.1.v4.1 annot-version=v4.1 MGDAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLTDGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN PDRGLITAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQ SVEMGTIHAGDFMRRFCSNLGMSNHTVKAATEAVKTSEQFDIRRSPISIAAAVIYIITQLSDDKKPLRDISLATGVAEGTIRNSYKDLYPHVSKIIPSWY ASEEDLKNLCSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10330			Cyclin-like family protein (.1...		Potri.016G057100 [exp]	0	1	TFIIB1.3
AT5G53000		TAP46	2A phosphatase associated prot...		Potri.015G012200 [exp]	1.00	0.7553
AT3G58750		CSY2	citrate synthase 2 (.1)		Potri.016G089300 [exp]	12.48	0.6338
AT3G49100			Signal recognition particle, S...		Potri.005G219400 [exp]	13.41	0.7535
AT1G75560			zinc knuckle (CCHC-type) famil...		Potri.005G234700 [exp]	31.49	0.6915
AT3G60540			Preprotein translocase Sec, Se...		Potri.002G143100 [exp]	32.09	0.7248
AT5G04430		BTR1S, BTR1L, B...	BINDING TO TOMV RNA 1S \(SHORT...		Potri.008G030700 [exp]	38.34	0.6080
AT5G57460			unknown protein		Potri.006G168200 [exp]	45.09	0.6887
AT5G16790		AtTHO7	Tho complex subunit 7/Mft1p (....		Potri.013G082900 [exp]	47.56	0.6453
AT5G05760		ATSYP31, ATSED5...	T-SNARE SED 5, syntaxin of pla...		Potri.010G191100 [exp]	54.77	0.6808	Pt-SYP31.1
AT1G68310		AE7	AS1/2 ENHANCER7, Protein of un...		Potri.001G135800 [exp]	55.51	0.5928

Compare expression of checked genes

Potri.016G057100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.