Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57270 416 / 3e-146 BG1 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) AT3G57240 413 / 4e-145 BG3 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) AT3G57260 386 / 2e-134 AtPR2, PR-2, PR2, BG2, BGL2 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) AT4G16260 344 / 9e-118 Glycosyl hydrolase superfamily protein (.1) AT5G56590 244 / 1e-76 O-Glycosyl hydrolases family 17 protein (.1) AT1G77780 223 / 3e-70 Glycosyl hydrolase superfamily protein (.1) AT5G20390 219 / 4e-69 Glycosyl hydrolase superfamily protein (.1) AT1G77790 216 / 2e-67 Glycosyl hydrolase superfamily protein (.1) AT5G20340 216 / 2e-67 BG5 beta-1,3-glucanase 5 (.1) AT2G01630 215 / 6e-67 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G057600 [exp] 587 / 0 AT3G57270 414 / 2e-145 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.006G048100 [exp] 573 / 0 AT3G57270 382 / 6e-133 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.006G046100 [exp] 424 / 2e-149 AT3G57270 370 / 4e-128 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.010G142800 [exp] 379 / 5e-131 AT4G16260 433 / 2e-152 Glycosyl hydrolase superfamily protein (.1) Potri.010G143166 [exp] 364 / 5e-126 AT4G16260 432 / 5e-153 Glycosyl hydrolase superfamily protein (.1) Potri.001G255100 [exp] 355 / 3e-122 AT4G16260 369 / 9e-128 Glycosyl hydrolase superfamily protein (.1) Potri.009G050300 [exp] 300 / 5e-101 AT4G16260 285 / 5e-95 Glycosyl hydrolase superfamily protein (.1) Potri.005G172000 [exp] 265 / 2e-86 AT1G77780 338 / 6e-115 Glycosyl hydrolase superfamily protein (.1) Potri.009G050401 [exp] 258 / 3e-85 AT4G16260 263 / 2e-87 Glycosyl hydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019801 [exp] 428 / 6e-151 AT3G57270 367 / 6e-127 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10014109 [exp] 421 / 4e-148 AT3G57270 361 / 1e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10014108 [exp] 413 / 8e-142 AT3G57270 366 / 3e-123 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10002807 [exp] 381 / 3e-132 AT3G57240 339 / 7e-116 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10014110 [exp] 369 / 3e-128 AT3G57270 359 / 2e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10027860 [exp] 368 / 3e-127 AT3G57260 322 / 4e-109 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) Lus10031037 [exp] 319 / 6e-108 AT3G57240 312 / 3e-105 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10016883 [exp] 304 / 3e-102 AT4G16260 391 / 1e-136 Glycosyl hydrolase superfamily protein (.1) Lus10010091 [exp] 271 / 4e-85 AT1G02305 520 / 0.0 Cysteine proteinases superfamily protein (.1) Lus10035423 [exp] 248 / 5e-80 AT3G57270 266 / 3e-87 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Potri.016G057400.1 pacid=42810309 polypeptide=Potri.016G057400.1.p locus=Potri.016G057400 ID=Potri.016G057400.1.v4.1 annot-version=v4.1 ATGGCTAGATCAAATTTAGCTGGCAAAGGCCCTTCCATGATTTCCATAATGCTACTCTTTGGGCTCCTACTAGCTAGCCTAGATACAACAGGTGCCCAGA TAGGTGTTTGCTATGGAATGCTTGGTAACTTACCACCACCATCAGAAGTCATAGCTCTCTACAACCAGAGGGGCATTCGCAGAATGCGACTTTATGATCC AAACCAAGATGCTCTACGAGCCCTTGGAGGCACCAACATTGAGCTCATGCTAGGTCTTCCAAATCCGGATCTTCAAAGGATTGCTTCCAGTCAAGCCAAC GCAAATGCATGGGTGCAAAGCAATGTAAAAATTTTTGGCAATGTCAAGTTTCGATACATTGCGGTAGGAAATGAGGTTAAGCCCTCAGATTCATTCGCAC AGTTTCTAGTCCCTGCCATGCAAAACATTCGCAACGCACTCAATTCAGCTGGACTAGGAAGTATCAAAGTTTCAACCGCTATTGATAATGGGGTCATAGC AGATGGTTCCTTCCCTCCCTCAAAAAGCTCTTTCAAGGGAGACTATAGACCACTTCTCGATCCGATCATTCGCTTTTTAGTGAACAACCAAGCTCCATTA CTGCTTAACTCGTATCCATACATCAGTTACTCACTTAACACAAGAGACATTCGTCTTGATTATGCTCTTTTCACAGCTCCATCACCACTAGTCTCTGACC CACCACTGAATTACCAAAACCTCTTCGATGCCCTTCTTGACACTGTTTACGCTGCTTTGGAGAAATCTGGAGGGGGTTCTTTGGAAATCGTGGTATCAGA GAGTGGTTGGCCAACGGCTGGAGGGACAGGAACATCGGTTGATAATGCAAGAACTTATAACAACAACTTAGTTCAACATGTGAAGAAAGGAACCCCAAAG AGGCCTGGAAAGCCTATAGAAACTTATATTTTTGCCATGTTTGATGAGAGTAACAAAAACCCTGAACTTGAGAAACATTGGGGGCTCTTTTCTCCAAATA AACAGCCAAAATATGACATCAATCTCAACTAA
AA sequence Show only first row Show all	>Potri.016G057400.1 pacid=42810309 polypeptide=Potri.016G057400.1.p locus=Potri.016G057400 ID=Potri.016G057400.1.v4.1 annot-version=v4.1 MARSNLAGKGPSMISIMLLFGLLLASLDTTGAQIGVCYGMLGNLPPPSEVIALYNQRGIRRMRLYDPNQDALRALGGTNIELMLGLPNPDLQRIASSQAN ANAWVQSNVKIFGNVKFRYIAVGNEVKPSDSFAQFLVPAMQNIRNALNSAGLGSIKVSTAIDNGVIADGSFPPSKSSFKGDYRPLLDPIIRFLVNNQAPL LLNSYPYISYSLNTRDIRLDYALFTAPSPLVSDPPLNYQNLFDALLDTVYAALEKSGGGSLEIVVSESGWPTAGGTGTSVDNARTYNNNLVQHVKKGTPK RPGKPIETYIFAMFDESNKNPELEKHWGLFSPNKQPKYDINLN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Potri.016G057400 [exp]	0	1
AT4G30460			glycine-rich protein (.1)		Potri.006G178200 [exp]	1.41	0.9936
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Potri.006G179300 [exp]	2.44	0.9919
AT5G10770			Eukaryotic aspartyl protease f...		Potri.018G014900 [exp]	3.87	0.9769
					Potri.008G028050 [exp]	4.47	0.9564
AT5G10770			Eukaryotic aspartyl protease f...		Potri.018G014700 [exp]	4.89	0.9668
AT3G28960			Transmembrane amino acid trans...		Potri.008G086500 [exp]	5.29	0.9696
AT3G56630		CYP94D2	"cytochrome P450, family 94, s...		Potri.016G031850 [exp]	6.00	0.9600
AT5G24090		ATCHIA	chitinase A (.1)		Potri.002G165700 [exp]	6.00	0.9762	CHI3.11
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Potri.016G057600 [exp]	6.32	0.8846
AT1G43650			nodulin MtN21 /EamA-like trans...		Potri.002G068300 [exp]	6.48	0.9244

Compare expression of checked genes

Potri.016G057400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.