Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57270 414 / 1e-145 BG1 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) AT3G57240 404 / 1e-141 BG3 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) AT3G57260 385 / 5e-134 AtPR2, PR-2, PR2, BG2, BGL2 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) AT4G16260 336 / 1e-114 Glycosyl hydrolase superfamily protein (.1) AT5G56590 241 / 2e-75 O-Glycosyl hydrolases family 17 protein (.1) AT5G58090 221 / 2e-68 O-Glycosyl hydrolases family 17 protein (.1) AT5G20390 216 / 1e-67 Glycosyl hydrolase superfamily protein (.1) AT4G29360 218 / 9e-67 O-Glycosyl hydrolases family 17 protein (.1.2) AT1G77780 211 / 2e-65 Glycosyl hydrolase superfamily protein (.1) AT5G20330 206 / 9e-64 BETAG4 "beta-1,3-glucanase 4", beta-1,3-glucanase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G057400 [exp] 587 / 0 AT3G57270 416 / 4e-146 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.006G048100 [exp] 562 / 0 AT3G57270 382 / 6e-133 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.006G046100 [exp] 423 / 7e-149 AT3G57270 370 / 4e-128 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.010G142800 [exp] 377 / 2e-130 AT4G16260 433 / 2e-152 Glycosyl hydrolase superfamily protein (.1) Potri.001G255100 [exp] 363 / 2e-125 AT4G16260 369 / 9e-128 Glycosyl hydrolase superfamily protein (.1) Potri.010G143166 [exp] 362 / 5e-125 AT4G16260 432 / 5e-153 Glycosyl hydrolase superfamily protein (.1) Potri.009G050300 [exp] 309 / 2e-104 AT4G16260 285 / 5e-95 Glycosyl hydrolase superfamily protein (.1) Potri.005G172000 [exp] 264 / 3e-86 AT1G77780 338 / 6e-115 Glycosyl hydrolase superfamily protein (.1) Potri.009G050401 [exp] 253 / 6e-83 AT4G16260 263 / 2e-87 Glycosyl hydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019801 [exp] 406 / 4e-142 AT3G57270 367 / 6e-127 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10014109 [exp] 398 / 5e-139 AT3G57270 361 / 1e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10014108 [exp] 394 / 2e-134 AT3G57270 366 / 3e-123 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10014110 [exp] 361 / 5e-125 AT3G57270 359 / 2e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10002807 [exp] 361 / 2e-124 AT3G57240 339 / 7e-116 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10027860 [exp] 350 / 3e-120 AT3G57260 322 / 4e-109 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) Lus10016883 [exp] 311 / 5e-105 AT4G16260 391 / 1e-136 Glycosyl hydrolase superfamily protein (.1) Lus10031037 [exp] 308 / 1e-103 AT3G57240 312 / 3e-105 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10010091 [exp] 275 / 8e-87 AT1G02305 520 / 0.0 Cysteine proteinases superfamily protein (.1) Lus10035423 [exp] 249 / 2e-80 AT3G57270 266 / 3e-87 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Potri.016G057600.1 pacid=42810245 polypeptide=Potri.016G057600.1.p locus=Potri.016G057600 ID=Potri.016G057600.1.v4.1 annot-version=v4.1 ATGGCTAGATCAAATATAGCTGGCAAAAGCCCTTCCATGATTTCCATAATGCTACTCTTTGGGCTCCTACTAGCTAGCCTAGATACAACAGGTGCCCAGA TAGGTGTTTGCTATGGAATGAATGGTAACTTACCACCAGCACAAGAAGTCATAGATCTCTACAACCAGAGGGGCATTCGCAGAATGCGACTCTATGATCC AAACCAAGATGCTCTACGAGCCCTTGGAGGCACCAACATTGAGCTCATGCTAGGTCTTCCAAACTCGGATCTTGAAAGGATTGCTTCTAGTCAGACCAAC GCAAATGCATGGGTGCAAAGAAATGTAAGAAGTTTTGGCAACGTCAGGTTTCGATACATTGCGGTTGGAAATGAGGTTAGGCCATTCGATTCATATGCAC AGTTTCTAGTCCCTGCCATGAAAAACATTCGCAACGCACTCTATTCAGCTGGACTAGGAAATATCAAAGTTTCAACCGCTATTGATAATGGGGTCATAGA AGATGATTCCTCCCCTCCCTCAAAAGGCTCTTTCAGGGGAGACCACAGACCATTTCTCGATCCGATCATTCGCTTTTTACTGAACAACCAAGCTCCATTA CTGGTTAACTTGTATCCATACTTAAGTTACACCGGTAACTCAGAAGACATTCGTCTTGATTATGCTCTTTTCACAGCTCCATCATCACTAGTCTCTGACC CACCACTGAATTACCAAAACCTCTTCGATGCCATTCTTGACACTGTTTACGCTGCTTTGGAGAAATCTGGAGGGGGTTCTTTGGATATCGTGGTATCAGA GAGTGGTTGGCCAACGGCTGGAGGGACAGGAACATCGGTTGATAATGCAAGAATTTATAACAACAACTTAGTTCAACATGTGAAGAGAGGAAGCCCAAAG AAGCCTGGAAAGCCCATAGAAACGTATATTTTTTCCATGTTTGATGAGAATTACAAAAACCCTGAACTTGAGAAACACTGGGGGCTCTTTCTTCCAAATA AACAGCCCAAATATAACATCAATCTCCGCTGA
AA sequence Show only first row Show all	>Potri.016G057600.1 pacid=42810245 polypeptide=Potri.016G057600.1.p locus=Potri.016G057600 ID=Potri.016G057600.1.v4.1 annot-version=v4.1 MARSNIAGKSPSMISIMLLFGLLLASLDTTGAQIGVCYGMNGNLPPAQEVIDLYNQRGIRRMRLYDPNQDALRALGGTNIELMLGLPNSDLERIASSQTN ANAWVQRNVRSFGNVRFRYIAVGNEVRPFDSYAQFLVPAMKNIRNALYSAGLGNIKVSTAIDNGVIEDDSSPPSKGSFRGDHRPFLDPIIRFLLNNQAPL LVNLYPYLSYTGNSEDIRLDYALFTAPSSLVSDPPLNYQNLFDAILDTVYAALEKSGGGSLDIVVSESGWPTAGGTGTSVDNARIYNNNLVQHVKRGSPK KPGKPIETYIFSMFDENYKNPELEKHWGLFLPNKQPKYNINLR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Potri.016G057600 [exp]	0	1
					Potri.001G379400 [exp]	4.47	0.8786
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Potri.017G124700 [exp]	5.65	0.8817	Pt-HBGGPPS2.3
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Potri.016G057400 [exp]	6.32	0.8846
					Potri.012G054000 [exp]	11.61	0.8817
AT2G27510		ATFD3	ferredoxin 3 (.1)		Potri.009G163800 [exp]	13.89	0.6745
					Potri.001G141701 [exp]	19.89	0.8515
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Potri.006G179300 [exp]	20.04	0.8687
AT4G30460			glycine-rich protein (.1)		Potri.006G178200 [exp]	24.37	0.8593
					Potri.008G028050 [exp]	30.00	0.8283
AT5G10770			Eukaryotic aspartyl protease f...		Potri.018G014900 [exp]	32.40	0.8407

Compare expression of checked genes

Potri.016G057600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.