Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10140 423 / 2e-147 RECA3 RECA homolog 3 (.1) AT2G19490 308 / 7e-102 recA DNA recombination family protein (.1) AT1G79050 191 / 1e-56 recA DNA recombination family protein (.1.2) AT3G32920 181 / 3e-55 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G048000 [exp] 616 / 0 AT3G10140 427 / 5e-149 RECA homolog 3 (.1) Potri.018G067900 [exp] 318 / 6e-106 AT2G19490 547 / 0.0 recA DNA recombination family protein (.1) Potri.006G148700 [exp] 311 / 2e-103 AT2G19490 535 / 0.0 recA DNA recombination family protein (.1) Potri.001G438900 [exp] 186 / 9e-55 AT1G79050 609 / 0.0 recA DNA recombination family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042033 [exp] 430 / 1e-150 AT3G10140 378 / 4e-130 RECA homolog 3 (.1) Lus10018037 [exp] 434 / 3e-150 AT3G10140 385 / 2e-131 RECA homolog 3 (.1) Lus10021585 [exp] 299 / 2e-98 AT2G19490 545 / 0.0 recA DNA recombination family protein (.1) Lus10017151 [exp] 296 / 5e-97 AT2G19490 538 / 0.0 recA DNA recombination family protein (.1) Lus10026204 [exp] 184 / 7e-54 AT1G79050 642 / 0.0 recA DNA recombination family protein (.1.2) Lus10042462 [exp] 184 / 1e-53 AT1G79050 637 / 0.0 recA DNA recombination family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00154 [poplar] [flax] RecA recA bacterial DNA recombination protein
Representative CDS sequence Show only first row Show all	>Potri.016G057700.1 pacid=42810592 polypeptide=Potri.016G057700.1.p locus=Potri.016G057700 ID=Potri.016G057700.1.v4.1 annot-version=v4.1 ATGGTACTTTCAATTCAATCACATCGTTTCAATTCCTTCGCAAGATTTCGACTTTCCTCTCTCCTCCCTTCTCTATATCAGAATGGAAGAAATGCAACCA CTTTTACTGGAAGCAATGATAATAGTCTTTCTTCTGTAGTTTCAGATTTTGAACCTGATGAACTCCATGATGATGGCGAAGCAAAACAGAAAGATAATGC ACTTCGTTTGGCTCTCACACAGCTAGCTGGTGAATTTGGTAGAGAGTCTATGTTGTCATTGCAGCGGTTTTTCAACTCACGAAGGGCTCCTGTAATATCA ACAGGCTCGTTGAAGCTTGATCTTGCACTTGGCATTGGTGGATTACCGAAGGGAAGAATGGTTGAAATCTATGGGAAAGAAGCTTCTGGCAAGACAACTC TTGCACTTCATATTATCAAGGAAGCTCAAAAACTTGGAGGATATTGTGCATATCTTGATGTAGAGAATGCAATGGACCCTTTACTTCCTGAATCAATGGG CATAAACACAGAAAATCTTCTTATTTCACATCCAGATTGTGCTGAAAATTTGCTCAGTGTAGTCGATACTCTGACTAAAAGTGGTTCTGTAGATGTTATC GTGGTGGATAGTGTTGCTGCACTTGTCCCCCAACGTGAGATTGATACTGCGGTAGGAGGCACCTTTGAAGATATACAATCACGATTAATGACCCAAGCAC TACGAAAGATCAATTATTCATTATGCCAATCACAAACTCTCATTATTTTTCTTAATCAGGTTAGAAAAAGTTTAAAATCAGGGCGTGCAGAAGAGGTCAC TTGTGGCGGAAATGCCTTGAAATTCTATTCAGCTGTGCGTTTGAGAATGATCAGAACAAGACTGCTCAAGACTGAGGACAGGATAACCGGTCTTGGGGTG TGTGCACAAGTGGTGAAAAATAAATTGGCTCCTGCTATGACGAAAGCTGAACTTGAGATACAGTTTGGGAGAGGCTTTTGCTCTGAATCTGAGGTCTTAG AATTAGCTTGCGAGCACAGTCTCATCAAGAAAGAAGGAAGCAGCTATGTCATTGGCAGAAAGGTATTTGGCAATGAACGTGTAGCTGAACAATACTTAAT GGAAAATGAAGGGGTTCATGATCAAATAGTTGCAAAATTAAGGGAAAAATTATTTCAGAGGAAGATGGAACTGTGA
AA sequence Show only first row Show all	>Potri.016G057700.1 pacid=42810592 polypeptide=Potri.016G057700.1.p locus=Potri.016G057700 ID=Potri.016G057700.1.v4.1 annot-version=v4.1 MVLSIQSHRFNSFARFRLSSLLPSLYQNGRNATTFTGSNDNSLSSVVSDFEPDELHDDGEAKQKDNALRLALTQLAGEFGRESMLSLQRFFNSRRAPVIS TGSLKLDLALGIGGLPKGRMVEIYGKEASGKTTLALHIIKEAQKLGGYCAYLDVENAMDPLLPESMGINTENLLISHPDCAENLLSVVDTLTKSGSVDVI VVDSVAALVPQREIDTAVGGTFEDIQSRLMTQALRKINYSLCQSQTLIIFLNQVRKSLKSGRAEEVTCGGNALKFYSAVRLRMIRTRLLKTEDRITGLGV CAQVVKNKLAPAMTKAELEIQFGRGFCSESEVLELACEHSLIKKEGSSYVIGRKVFGNERVAEQYLMENEGVHDQIVAKLREKLFQRKMEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10140		RECA3	RECA homolog 3 (.1)		Potri.016G057700 [exp]	0	1
AT1G49970		SVR2, NCLPP5, C...	SUPPRESSOR OF VARIEGATION 2, N...		Potri.001G295266 [exp]	3.74	0.8414
AT5G24670		TAD3, EMB2820	tRNA adenosine deaminase 3, EM...		Potri.013G094800 [exp]	3.87	0.8640
AT4G19540		INDH, INDL	IND1(iron-sulfur protein requi...		Potri.002G042600 [exp]	10.34	0.7634
AT1G04080		PRP39	Tetratricopeptide repeat (TPR)...		Potri.002G257100 [exp]	21.54	0.7840
AT1G29750		RKF1	receptor-like kinase in flower...		Potri.011G072691 [exp]	22.36	0.7891
AT3G59580		NLP9	Plant regulator RWP-RK family ...		Potri.017G020398 [exp]	22.36	0.8492
					Potri.005G156500 [exp]	28.46	0.7925
AT1G80700			unknown protein		Potri.003G180500 [exp]	31.74	0.8250
AT5G26250			Major facilitator superfamily ...		Potri.008G150800 [exp]	31.96	0.8261
AT2G02250		ATPP2-B2	phloem protein 2-B2 (.1)		Potri.018G016000 [exp]	32.40	0.8435

Compare expression of checked genes

Potri.016G057700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.