Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27660 141 / 4e-36 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G44370 120 / 3e-31 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G44380 119 / 9e-31 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G17740 110 / 1e-27 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G28270 103 / 4e-25 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G43520 102 / 6e-25 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G40590 97 / 4e-23 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G44400 87 / 2e-20 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G37820 89 / 1e-19 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G42060 86 / 1e-18 Cysteine/Histidine-rich C1 domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G038400 [exp] 141 / 3e-38 AT2G27660 218 / 3e-65 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.001G229500 [exp] 139 / 1e-37 AT2G27660 171 / 5e-48 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.001G229900 [exp] 115 / 4e-29 AT2G28270 223 / 2e-72 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.005G258800 [exp] 69 / 6e-13 AT1G20990 270 / 1e-89 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.010G198200 [exp] 67 / 2e-12 AT2G37820 166 / 1e-49 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G044800 [exp] 69 / 3e-12 AT5G22355 260 / 3e-77 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G044432 [exp] 66 / 1e-11 AT5G45730 135 / 7e-35 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G047300 [exp] 66 / 3e-11 AT5G22355 234 / 1e-67 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G057800 [exp] 64 / 1e-10 AT5G22355 273 / 4e-82 Cysteine/Histidine-rich C1 domain family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016256 [exp] 216 / 6e-67 AT2G27660 107 / 8e-26 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10021061 [exp] 215 / 3e-66 AT2G27660 98 / 3e-22 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10004165 [exp] 200 / 4e-60 AT2G27660 95 / 3e-21 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10003919 [exp] 89 / 4e-20 AT2G44380 179 / 2e-56 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10037470 [exp] 90 / 3e-19 AT2G44380 177 / 5e-52 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10017477 [exp] 59 / 2e-09 AT2G16050 340 / 4e-119 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10028723 [exp] 56 / 3e-08 AT1G20990 269 / 9e-89 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10036411 [exp] 53 / 3e-07 AT4G12790 444 / 5e-156 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Potri.016G057900.1 pacid=42810097 polypeptide=Potri.016G057900.1.p locus=Potri.016G057900 ID=Potri.016G057900.1.v4.1 annot-version=v4.1 ATGGAAGTTGCAGAGGAACATGCCCTTCACCATTTTAGTCATCAACATCCTTTGGGGCGTCCCATAGCCCCTTCCACTGGAAACATTACCTGTGATGGAT GCAGCCTCCGAATATTGCCTGGAAAGGACTTCTATAACTGCAAAACCTGCTCGTTTTTTCTTCACCGCGTATGTTCCAATATGCCAAGAAAAACCCGACA CCCTGCACATCCAGATCACTATCTAACCCTTTTGGTTTCACCTCCATTGGACAATAGCAACTTCAAGTGTGAGGCTTGTGGAGATCACATCACTGGCTTC TGCTACAATGTTACCGAGTCTAACATTTACTATCACATCTTATGCTCAGTACTGCCTATCTCGGTTATCACCTATTCCCATCCTCACGCTCTCAAAATAG AATTTTCACCTCCATATGACTTCAGTTGCGATCTATGCAAGAATCCAAGTTCTAAGGGTTGGTTGTATAGATGTAGCTTTTGCGAGTTTGATACGCATAT TGCTTGTGCCATTTCCAATAAAAAAGCAGAACCTGTGCCGCTGCTTGATACTTTAACAAGGCAGATCATGGAGGCCGACCGAAAGATAGATTATGGAAGC CAGAGTAATGAACTAATGCAGCTAATTGTACTGGGAGTTGAAAGGGATATTGAAAGGAATGACCAAGAAGTTGTCAGCACTGCAGTGGCTGGATGGGATG AGAGATTGCACAGCCCCAAAGAGCAACACAGCGTAAAAATCAAAGGGATTGAACGATTTGGTTTGACTCATTTAGAACCATACTCGCCTAACATTCCTCC AAGTCCAGAAGACCGATCTCGACATCAGGATCCATCAACCCAAATTTCTGAAGACATGACAGTCGCAAGTTATCAATTCAGTGAGATGTGTTTTTCGATA GATTTGCTCAAGTCTTATCCTAGTGCTGATCACCACCCATATTCTACAAATATGGAAGCCAGTTCTCAATATATAAAAGATGTTCCTAGAGTTGAAGCAA AGATCAAGTCAGACAATGTGGCAATGCCACAAGGAGTCCAAAAACACCGTTATCCTAACATGCCAGTGACTGATCCCCTTTATAGAGGTCCGAATAACTG GTATAATGAAGCATTCTTAGGCCAAACTGGGGAAAAGATAATAGCTACTGGATACGAGAGCAGGGCAGGCATTAAAGATCAGAGTCCTAAATCAAATATG AAGAGTTCAAGGTATTCATGTTGCTGGAAGCTTCTTCCTTACTTCTATCGTTCAAGATATGAGAAATGTTCTAAAAGTTTCAAGATTGGAGGCCTATGA
AA sequence Show only first row Show all	>Potri.016G057900.1 pacid=42810097 polypeptide=Potri.016G057900.1.p locus=Potri.016G057900 ID=Potri.016G057900.1.v4.1 annot-version=v4.1 MEVAEEHALHHFSHQHPLGRPIAPSTGNITCDGCSLRILPGKDFYNCKTCSFFLHRVCSNMPRKTRHPAHPDHYLTLLVSPPLDNSNFKCEACGDHITGF CYNVTESNIYYHILCSVLPISVITYSHPHALKIEFSPPYDFSCDLCKNPSSKGWLYRCSFCEFDTHIACAISNKKAEPVPLLDTLTRQIMEADRKIDYGS QSNELMQLIVLGVERDIERNDQEVVSTAVAGWDERLHSPKEQHSVKIKGIERFGLTHLEPYSPNIPPSPEDRSRHQDPSTQISEDMTVASYQFSEMCFSI DLLKSYPSADHHPYSTNMEASSQYIKDVPRVEAKIKSDNVAMPQGVQKHRYPNMPVTDPLYRGPNNWYNEAFLGQTGEKIIATGYESRAGIKDQSPKSNM KSSRYSCCWKLLPYFYRSRYEKCSKSFKIGGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27660			Cysteine/Histidine-rich C1 dom...		Potri.016G057900 [exp]	0	1
					Potri.005G193200 [exp]	7.34	0.9678
AT3G29810		COBL2	COBRA-like protein 2 precursor...		Potri.004G167100 [exp]	8.36	0.9809
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Potri.013G105100 [exp]	11.83	0.9655
AT3G48660			Protein of unknown function (D...		Potri.017G065444 [exp]	11.83	0.9754
AT5G39160			RmlC-like cupins superfamily p...		Potri.011G163300 [exp]	13.96	0.9718	GER2.30
AT5G27730			Protein of unknown function (D...		Potri.006G122500 [exp]	18.57	0.9708
AT1G47710			Serine protease inhibitor (SER...		Potri.017G100900 [exp]	21.63	0.9703
					Potri.005G130750 [exp]	22.80	0.9715
AT3G17675			Cupredoxin superfamily protein...		Potri.013G054500 [exp]	28.56	0.9699
AT5G24090		ATCHIA	chitinase A (.1)		Potri.014G091600 [exp]	29.34	0.9699	Pt-CHI3.6

Compare expression of checked genes

Potri.016G057900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.