Plant FIBer expression Database

Potri.016G058000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G42040 92 / 2e-21 unknown protein
AT5G53660 44 / 0.0001 GRF ATGRF7 growth-regulating factor 7 (.1)
AT2G36400 43 / 0.0003 GRF ATGRF3 growth-regulating factor 3 (.1)
AT3G52910 42 / 0.0005 GRF ATGRF4 growth-regulating factor 4 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G193500
[exp]
376 / 2e-130 AT2G42040 82 / 1e-17 unknown protein
Potri.006G193300
[exp]
279 / 2e-92 AT2G42040 91 / 1e-20 unknown protein
Potri.016G058100
[exp]
276 / 2e-91 AT2G42040 91 / 7e-21 unknown protein
Potri.016G059400
[exp]
50 / 8e-07 AT2G42040 50 / 7e-07 unknown protein
Potri.019G042300
[exp]
43 / 0.0001 AT3G13960 157 / 2e-44 growth-regulating factor 5 (.1)
Potri.006G115200
[exp]
43 / 0.0002 AT3G52910 244 / 3e-77 growth-regulating factor 4 (.1)
Potri.013G077500
[exp]
42 / 0.0003 AT3G13960 160 / 1e-45 growth-regulating factor 5 (.1)
Potri.005G026950
[exp]
40 / 0.0007 AT1G09060 167 / 4e-48 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3)
Potri.014G071800
[exp]
41 / 0.0008 AT2G45480 164 / 8e-46 growth-regulating factor 9 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004164
[exp]
75 / 2e-15 AT2G42040 80 / 5e-18 unknown protein
Lus10021062
[exp]
74 / 4e-15 AT2G42040 80 / 6e-18 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08879 WRC WRC
Representative CDS sequence
>Potri.016G058000.1 pacid=42809080 polypeptide=Potri.016G058000.1.p locus=Potri.016G058000 ID=Potri.016G058000.1.v4.1 annot-version=v4.1
ATGAGGATCAGGAAAAGACAGGTTCCCTTACCTCTATCTTCTCTATCTCCTGTACCCCTCTCAGATCCCCAGTTCCAGACTCCTGTGGTGCAACTTCAAA
TACACAAAAACCCACCTCAAAATCTCCCCCAACAACCTCATAGGCTTGCTTGCTATGATTCCCAGGCATCTGATCAACCAAATCAACCGATCGGAGGTGG
CCAAGATTGCTCTGGTACTGCTGGGGCACAACAAGAAAAGAAGATTATGTTGGAGAAAGATGAGAGATGGAGAGATGGAGAGAGGAGTAATGATACCAGG
AAGGGAAGTTTCATGGGTGCAGAAATAGAAACTATGAATCTTACACCATCAAGTTGTTCCCGTCAAGGAGTTGAGAGATGGGGTGAGGGAGAGAAAGCAT
ATCCATTAAAGAGAAGAGGAAGGTTCGAAAGACCATCAGATGATGAAGAAATAATAATGGAGAAAGCTAAGAAAATGAAGACAAAGAGGAACAAGAAATG
CGTGCTGCAGAAAGGAAATAACAAAAAAGAAGAAGAAAGTAATGAAATCGTCAAAGAGGGCCTTGGTGGTGCTACTAATAATACTAGTGTTAAAAGGAAA
GCTAGAGGTGGTGCACTTATGGAAGGATCGAGGTGCAGTCGTGTAAATGGGAGAGGATGGAGGTGTTGCCAGCAAACTCTTGTGGGATACTCACTTTGTG
AGCATCACTTGGGCAAAGGAAGGCTGAGAAGCATGAATAGCGTTCGAAGCCGATCCATGGCTCGCACTGCACCCAAGAAGGCCGAGTCCAAGCCATTATC
GAGCTCGTCCTCATCGGAGGAAAAAAAAACGAAACGTTTATTATCAGATACTAAACTTGATGGTGTTCCAGCTGATGAAGATGGAGATGACACGAAGCCT
TTAATGATTGCAAAGAAGAAGGTGAAGCTTGGCATGGTCAAAGCTCGATCGATTAGCAGTTTGCTGGGCCTAGCAAATAATGGCATTGCAGTATCAGAGA
GTAGCAAGTAG
AA sequence
>Potri.016G058000.1 pacid=42809080 polypeptide=Potri.016G058000.1.p locus=Potri.016G058000 ID=Potri.016G058000.1.v4.1 annot-version=v4.1
MRIRKRQVPLPLSSLSPVPLSDPQFQTPVVQLQIHKNPPQNLPQQPHRLACYDSQASDQPNQPIGGGQDCSGTAGAQQEKKIMLEKDERWRDGERSNDTR
KGSFMGAEIETMNLTPSSCSRQGVERWGEGEKAYPLKRRGRFERPSDDEEIIMEKAKKMKTKRNKKCVLQKGNNKKEEESNEIVKEGLGGATNNTSVKRK
ARGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSVRSRSMARTAPKKAESKPLSSSSSSEEKKTKRLLSDTKLDGVPADEDGDDTKP
LMIAKKKVKLGMVKARSISSLLGLANNGIAVSESSK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G42040 unknown protein Potri.016G058000
[exp]
0 1
AT5G63700 zinc ion binding;DNA binding (... Potri.011G078050
[exp]
9.11 0.8132
Potri.010G210600
[exp]
11.35 0.7965
AT3G04730 AUX_IAA IAA16 indoleacetic acid-induced prot... Potri.005G053900
[exp]
14.14 0.7321
AT4G31880 unknown protein Potri.018G109600
[exp]
20.92 0.7992
Potri.002G202000
[exp]
23.91 0.7812
AT1G42430 unknown protein Potri.002G011300
[exp]
24.81 0.7719
ATCG00700 ATCG00700.1, PS... photosystem II reaction center... Potri.009G004950
[exp]
28.98 0.7791
AT3G54390 Trihelix sequence-specific DNA binding ... Potri.001G028400
[exp]
30.59 0.6741
AT1G13790 FDM4 factor of DNA methylation 4, X... Potri.001G240666
[exp]
31.24 0.7047
AT3G09110 Protein of unknown function (D... Potri.010G210500
[exp]
47.43 0.7726

Potri.016G058000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.