Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42040 91 / 7e-21 unknown protein AT5G53660 44 / 0.0001 GRF ATGRF7 growth-regulating factor 7 (.1) AT2G36400 43 / 0.0002 GRF ATGRF3 growth-regulating factor 3 (.1) AT3G52910 42 / 0.0004 GRF ATGRF4 growth-regulating factor 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G193300 [exp] 514 / 0 AT2G42040 91 / 1e-20 unknown protein Potri.016G058000 [exp] 298 / 7e-100 AT2G42040 92 / 2e-21 unknown protein Potri.006G193500 [exp] 285 / 1e-94 AT2G42040 82 / 1e-17 unknown protein Potri.016G059400 [exp] 66 / 7e-12 AT2G42040 50 / 7e-07 unknown protein Potri.012G022600 [exp] 45 / 6e-05 AT5G53660 137 / 1e-35 growth-regulating factor 7 (.1) Potri.006G115200 [exp] 44 / 0.0001 AT3G52910 244 / 3e-77 growth-regulating factor 4 (.1) Potri.005G026950 [exp] 42 / 0.0003 AT1G09060 167 / 4e-48 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.014G012800 [exp] 42 / 0.0005 AT2G22840 303 / 1e-95 growth-regulating factor 1 (.1) Potri.014G071800 [exp] 42 / 0.0006 AT2G45480 164 / 8e-46 growth-regulating factor 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021062 [exp] 83 / 2e-18 AT2G42040 80 / 6e-18 unknown protein Lus10004164 [exp] 81 / 9e-18 AT2G42040 80 / 5e-18 unknown protein Lus10020352 [exp] 44 / 0.0001 AT3G13960 167 / 2e-48 growth-regulating factor 5 (.1) Lus10009533 [exp] 44 / 0.0002 AT3G13960 162 / 7e-45 growth-regulating factor 5 (.1) Lus10038002 [exp] 40 / 0.0008 AT2G45480 78 / 5e-17 growth-regulating factor 9 (.1) Lus10011558 [exp] 42 / 0.0009 AT2G22840 268 / 2e-83 growth-regulating factor 1 (.1) Lus10009234 [exp] 40 / 0.001 AT2G45480 79 / 4e-17 growth-regulating factor 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08879 [poplar] [flax] WRC WRC
Representative CDS sequence Show only first row Show all	>Potri.016G058100.1 pacid=42809178 polypeptide=Potri.016G058100.1.p locus=Potri.016G058100 ID=Potri.016G058100.1.v4.1 annot-version=v4.1 ATGAGGATTAGAAACAGAAAGGTTCCTTTGCCTCTTTCATCCCTTTCCCCTATACCTCTCTCAGATCCCCAGTTTAGCCGGTCTCCGGTGGTGCAACTTC AATTACACAACAGCCCACATCAAAGTCTCCTTCAAGAACCTCAGAAGGATGAATACTTTGATCTTCACCTGCCTTCTGATCGCCTAAATCAACCGATCGG AGGTGGAAGCAAAGGTCATGATGATTGCTCCCATGGTGATGGGCCACAAGAAGAGAAGAAGGTTTTGTTGGAAGAGGGAGATGGGATTAAAGGAGGAGAA CTAAGAGAGAAGAGTAATGATACCAGGAGGGGAAGTTTCTTGAGTGAAGGAGTACACGTTACAGTTCTTCAACAATCTAGTTCTTCCCATCAAGGAGTTG GGAGATGGGGTGAGGGAGAGAAGGCATTTCCATTAAAGAAGAGAAGAGGGAGCTTTGAAAGGAGATGGAATGAAGAAACGATAGTGGATAGAAACAAGAA AATGAAAACCAAAATGAAGACAAAGATGAACAAGAAATGTGTGCAACAGAATGGTGATAATGAAGAAGATGAGAAGGAAACAAAAGAAGGTGCTGGTTCC AATATAAAAGCAAAGCCTAGGGGTGGTGCACTGTTGGAGGGATCACGGTGCAGTCGTGTTAATGGTAGAGGATGGAGGTGTTGTCAGCAAACCCTTGTGG GATACTCTCTTTGCGAACATCATTTGGGTAAAGGAAGGCTAAGAAGTATGAATAGTGTTCGAAGCCGATCCATTGCCACTACTGTACCAAAGAAGGACGA GTCTGAGGAAGTATCGAGCCATTCATTACCGTCGCAGAAGAAAGAAGAGACTAAAGGGGCTTCTTTAGATGATAAAGTTAGTGTTGCGTATGATGAAGAT GATAAGGAGAAGCCATTGGTGATCTCAAAGAGGAAGATGAAGCTTGGTGTGGTGAAAGCTCGATCAATGAGCAGCTTGTTGGGCCAAGCAAACAATGCAG TTGGAGTGGCTGAGAATAACGACTAG
AA sequence Show only first row Show all	>Potri.016G058100.1 pacid=42809178 polypeptide=Potri.016G058100.1.p locus=Potri.016G058100 ID=Potri.016G058100.1.v4.1 annot-version=v4.1 MRIRNRKVPLPLSSLSPIPLSDPQFSRSPVVQLQLHNSPHQSLLQEPQKDEYFDLHLPSDRLNQPIGGGSKGHDDCSHGDGPQEEKKVLLEEGDGIKGGE LREKSNDTRRGSFLSEGVHVTVLQQSSSSHQGVGRWGEGEKAFPLKKRRGSFERRWNEETIVDRNKKMKTKMKTKMNKKCVQQNGDNEEDEKETKEGAGS NIKAKPRGGALLEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSVRSRSIATTVPKKDESEEVSSHSLPSQKKEETKGASLDDKVSVAYDED DKEKPLVISKRKMKLGVVKARSMSSLLGQANNAVGVAENND

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42040			unknown protein		Potri.016G058100 [exp]	0	1
AT2G39760		ATBPM3	BTB/POZ/MATH-domains containin...		Potri.010G199200 [exp]	1.41	0.8673
AT4G34950			Major facilitator superfamily ...		Potri.004G173400 [exp]	4.00	0.8280
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Potri.002G084100 [exp]	5.09	0.8149	Pt-LACS9.3
					Potri.010G030750 [exp]	6.63	0.7896
AT1G16560			Per1-like family protein (.1.2...		Potri.015G136600 [exp]	6.92	0.8414
AT3G50910			unknown protein		Potri.007G022100 [exp]	11.61	0.8319
AT3G61180			RING/U-box superfamily protein...		Potri.002G155200 [exp]	11.74	0.8297
AT1G55480		ZKT	protein containing PDZ domain,...		Potri.001G002700 [exp]	12.60	0.7826
AT1G28310	DOF	AtDof1. 4	Dof-type zinc finger DNA-bindi...		Potri.004G046600 [exp]	13.11	0.8381
AT5G19430			RING/U-box superfamily protein...		Potri.001G275900 [exp]	14.69	0.7819

Compare expression of checked genes

Potri.016G058100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.