Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58030 329 / 4e-109 RING/U-box superfamily protein (.1.2.3.4) AT2G42030 254 / 3e-80 RING/U-box superfamily protein (.1) AT2G44410 127 / 3e-32 RING/U-box superfamily protein (.1) AT1G19310 118 / 1e-30 RING/U-box superfamily protein (.1) AT2G23780 109 / 2e-27 RING/U-box superfamily protein (.1) AT1G74990 105 / 3e-27 RING/U-box superfamily protein (.1) AT4G03510 100 / 7e-24 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2) AT4G27470 99 / 2e-23 ATRMA3 RING membrane-anchor 3 (.1) AT4G28270 90 / 1e-20 ATRMA2 RING membrane-anchor 2 (.1) AT3G07200 50 / 3e-07 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G193600 [exp] 617 / 0 AT3G58030 389 / 2e-132 RING/U-box superfamily protein (.1.2.3.4) Potri.009G023300 [exp] 167 / 2e-46 AT2G44410 192 / 3e-56 RING/U-box superfamily protein (.1) Potri.001G229600 [exp] 166 / 3e-46 AT2G44410 191 / 6e-56 RING/U-box superfamily protein (.1) Potri.002G133000 [exp] 117 / 3e-30 AT1G19310 244 / 5e-82 RING/U-box superfamily protein (.1) Potri.014G040400 [exp] 115 / 9e-30 AT1G19310 226 / 4e-75 RING/U-box superfamily protein (.1) Potri.007G031600 [exp] 113 / 6e-29 AT2G23780 227 / 4e-75 RING/U-box superfamily protein (.1) Potri.005G127900 [exp] 113 / 8e-29 AT2G23780 234 / 3e-78 RING/U-box superfamily protein (.1) Potri.001G401600 [exp] 103 / 3e-25 AT4G27470 205 / 5e-66 RING membrane-anchor 3 (.1) Potri.013G132300 [exp] 100 / 6e-24 AT4G03510 191 / 2e-60 RING membrane-anchor 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029292 [exp] 387 / 8e-132 AT3G58030 374 / 6e-127 RING/U-box superfamily protein (.1.2.3.4) Lus10016255 [exp] 377 / 7e-128 AT3G58030 362 / 2e-122 RING/U-box superfamily protein (.1.2.3.4) Lus10021063 [exp] 369 / 1e-124 AT3G58030 362 / 1e-122 RING/U-box superfamily protein (.1.2.3.4) Lus10004162 [exp] 361 / 1e-121 AT3G58030 367 / 3e-124 RING/U-box superfamily protein (.1.2.3.4) Lus10010791 [exp] 118 / 1e-30 AT1G19310 266 / 1e-90 RING/U-box superfamily protein (.1) Lus10016303 [exp] 118 / 1e-30 AT1G19310 268 / 2e-91 RING/U-box superfamily protein (.1) Lus10016796 [exp] 111 / 3e-28 AT2G23780 242 / 3e-81 RING/U-box superfamily protein (.1) Lus10022492 [exp] 107 / 9e-27 AT2G23780 241 / 1e-80 RING/U-box superfamily protein (.1) Lus10011184 [exp] 100 / 7e-24 AT4G03510 164 / 5e-50 RING membrane-anchor 1 (.1.2) Lus10018489 [exp] 100 / 9e-24 AT4G03510 159 / 7e-48 RING membrane-anchor 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13923 [poplar] [flax] zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.016G058300.1 pacid=42809391 polypeptide=Potri.016G058300.1.p locus=Potri.016G058300 ID=Potri.016G058300.1.v4.1 annot-version=v4.1 ATGGATGAGGAGACATCTGATACTATGAATCTTGATTTGAATCTCGGTCCTGGTCCTGAGGCTGAATCAGAATTAGAAGCACCTAATGATGCAGTGAATT TGGATGATTGGGTTGATGACCCTATTGTGAGAATTAGGGAAGCTGTCAGATTTAGGGCTCGACAACACAGGAGATGGAGACAATTTCAACTTCCACTACA AAGTCAAAGCCTTTCGGTGGAACTGAATCAACTGATGGGTAATCCTGGCCATGTGGGCACATTACAGGCTGGTGAGGGAAGTGTTGCTGCTGAAGAAAGA ACAAATGAAGCACCTAAATTGTGCGAAAATAACAATGTTTTTTTGGAAGATGAGGTGTCAGAGAAAAAGGATGATGTTGAGAAGACCAGTGACATTGATG GGAGCTTCTTTGATTGCAATATTTGTTTGGATTTGGCTACAGACCCTGTTGTTACTTGCTGTGGTCACTTGTTTTGTTGGCCATGCCTCTACCAGTGGTT GCATGTTCATTCAGATGCGAAAGAATGCCCAGTTTGCAAGGGAGAGGTGACCATGAAAAATGTGACCCCAATTTACGGCCGTGGATGTACCACCCGCGAG CCAGTAGAGGATACGAATCTGGAGATCCCTATTAGGCCTCATGCACGGCGGGTTGAGAGTTTGAGACAAACTGCTTCAAGGCATCTTTACAGCTTCCCAG TGGAGGAGATGCTTCGGCGACTTGGAAGTAGACTTGATTTCGCTCAGGATTTGTCTCTGCCACAGGACTCAAATGGTTCCCGTGGAGCTGCTGATCGGAC CCAATCCCTTCTGAATAGGATTATGACATATAGGGGAATGCGAGCTGAGCAAAATCCTATCGGACCTCCTGATGAGATAGTGGATTTAACTCAGACCAGC CCAAGTAGCCCTGTGGGAGGGCATGCACGTCGGCTTCATGACATAGTAGATTTAATACATTCTGGCACAGCCAGCACAGAGACAGGATCTGCTCGTCGGG CAAATGTGCTGCTACCTCGAAGATCACACCCACACTCTCAAAGATCTTCATCCCACACTGCATTTTCTCCTTTGAATTCAACTGAAGGGTTAGTTGAAAC ATATTTCCGAACCCATACCATAGGGAGGAATCACGAGCAGCCCCAGCCTGTTGATGATAGGGATTCTTTCTCAAGCATTGCTGCTGTTATAAACTCGGAG AGTCAAATGGACACTGCTGCGGAAATTGATTCTCCGGTCTCCCTGTCGACTTCTTCTTCCAGAAGAAGAAATAATGCTTCGAGAGTCTCTGATGTGGACA GTGGGGACTCTCGTGCACCTAGAAGGCGGAGATTGATTTAG
AA sequence Show only first row Show all	>Potri.016G058300.1 pacid=42809391 polypeptide=Potri.016G058300.1.p locus=Potri.016G058300 ID=Potri.016G058300.1.v4.1 annot-version=v4.1 MDEETSDTMNLDLNLGPGPEAESELEAPNDAVNLDDWVDDPIVRIREAVRFRARQHRRWRQFQLPLQSQSLSVELNQLMGNPGHVGTLQAGEGSVAAEER TNEAPKLCENNNVFLEDEVSEKKDDVEKTSDIDGSFFDCNICLDLATDPVVTCCGHLFCWPCLYQWLHVHSDAKECPVCKGEVTMKNVTPIYGRGCTTRE PVEDTNLEIPIRPHARRVESLRQTASRHLYSFPVEEMLRRLGSRLDFAQDLSLPQDSNGSRGAADRTQSLLNRIMTYRGMRAEQNPIGPPDEIVDLTQTS PSSPVGGHARRLHDIVDLIHSGTASTETGSARRANVLLPRRSHPHSQRSSSHTAFSPLNSTEGLVETYFRTHTIGRNHEQPQPVDDRDSFSSIAAVINSE SQMDTAAEIDSPVSLSTSSSRRRNNASRVSDVDSGDSRAPRRRRLI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58030			RING/U-box superfamily protein...		Potri.016G058300 [exp]	0	1
AT4G26980			RNI-like superfamily protein (...		Potri.011G090700 [exp]	3.87	0.8502
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Potri.007G052800 [exp]	6.32	0.8334
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G050300 [exp]	7.74	0.8171
AT4G10110			RNA-binding (RRM/RBD/RNP motif...		Potri.019G069000 [exp]	13.41	0.8029
AT2G44410			RING/U-box superfamily protein...		Potri.001G229600 [exp]	15.09	0.7963
AT1G16180			Serinc-domain containing serin...		Potri.001G038100 [exp]	19.79	0.8022
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Potri.016G066400 [exp]	21.26	0.8127
AT1G71210			Pentatricopeptide repeat (PPR)...		Potri.004G229100 [exp]	21.63	0.7962
AT5G60250			zinc finger (C3HC4-type RING f...		Potri.009G150100 [exp]	24.81	0.7952
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G046100 [exp]	25.78	0.7689

Compare expression of checked genes

Potri.016G058300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.