Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38180 345 / 8e-107 FAR1_related FRS5 FAR1-related sequence 5 (.1) AT2G27110 341 / 1e-104 FAR1_related FRS3 FAR1-related sequence 3 (.1.2.3) AT3G06250 295 / 5e-88 FAR1_related FRS7 FAR1-related sequence 7 (.1) AT5G18960 294 / 1e-87 FAR1_related FRS12 FAR1-related sequence 12 (.1) AT4G38170 280 / 8e-85 FRS9 FAR1-related sequence 9 (.1) AT4G15090 280 / 2e-82 FAR1_related FAR1 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) AT2G32250 275 / 1e-80 FAR1_related FRS2 FAR1-related sequence 2 (.1.2.3.4) AT3G22170 273 / 2e-79 FAR1_related FHY3 far-red elongated hypocotyls 3 (.1.2) AT1G76320 263 / 1e-76 FAR1_related FRS4 FAR1-related sequence 4 (.1.2) AT1G52520 258 / 3e-75 FAR1_related FRS6 FAR1-related sequence 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G058500 [exp] 643 / 0 AT4G38180 311 / 6e-95 FAR1-related sequence 5 (.1) Potri.005G257600 [exp] 364 / 3e-114 AT4G38180 891 / 0.0 FAR1-related sequence 5 (.1) Potri.011G145800 [exp] 363 / 1e-113 AT4G38180 1003 / 0.0 FAR1-related sequence 5 (.1) Potri.004G209000 [exp] 350 / 9e-109 AT4G38180 1163 / 0.0 FAR1-related sequence 5 (.1) Potri.009G170100 [exp] 344 / 2e-106 AT4G38180 1145 / 0.0 FAR1-related sequence 5 (.1) Potri.009G158400 [exp] 346 / 5e-106 AT2G27110 1138 / 0.0 FAR1-related sequence 3 (.1.2.3) Potri.004G196300 [exp] 344 / 2e-105 AT2G27110 1115 / 0.0 FAR1-related sequence 3 (.1.2.3) Potri.008G011800 [exp] 342 / 8e-105 AT2G27110 947 / 0.0 FAR1-related sequence 3 (.1.2.3) Potri.015G139300 [exp] 313 / 1e-95 AT4G38180 359 / 1e-112 FAR1-related sequence 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031825 [exp] 224 / 3e-64 AT1G76320 656 / 0.0 FAR1-related sequence 4 (.1.2) Lus10026854 [exp] 65 / 5e-11 AT3G59470 121 / 1e-32 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Lus10020226 [exp] 62 / 3e-10 AT3G59470 120 / 7e-33 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Lus10023137 [exp] 41 / 0.001 AT5G18960 46 / 3e-06 FAR1-related sequence 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03101 [poplar] [flax] FAR1 FAR1 DNA-binding domain CL0274 [poplar] [flax] PF04434 [poplar] [flax] SWIM SWIM zinc finger CL0219 [poplar] [flax] RNase_H PF10551 [poplar] [flax] MULE MULE transposase domain
Representative CDS sequence Show only first row Show all	>Potri.016G058700.2 pacid=42809474 polypeptide=Potri.016G058700.2.p locus=Potri.016G058700 ID=Potri.016G058700.2.v4.1 annot-version=v4.1 ATGGTTGAAGCTGTTTCAGGAAATGATCCTCAAACCAGTTATAGTGCCCAAGGTTCCAATGAGAGCTTGCGGGACAACTTGGTCTCTAGGAATCAAGTTG AGGCAGCAGCCAACTTGTTCTCTAAGAATCAAGATGAGGCATCAACATCTGAATGGGCGGGCAATGGAAACGGTCTGGACTTTACGTGTGACAGTTCTGT ACTAAGGGAAGGGATTTCGGGTCTGGATGGTGATTGGCGCCAAGGTCTTGACGAGCCATCCAAATATACGAAGAAGAGGAGGAATACAGATGTAAGCAGC AGCAGTGCATTAAATAGCGCTAGTGATCTATCACTATCGGAGGCTCTGTCTCAGATTTCTAAAGATCTAGGTCTATCTTCACCTTCATTATGTTCTGGAG AAGAAGAAGAAGACAAGGAGAATGAGGAGGCTGATTCGCCAGAAAGCCATGGTGAAAACCTTCAAGCTGAGCTAGCTTTACATCATTTAGAGTGTTATGG GGATGATATGCTGTCATCGGACAGCAATGAAGATGAGGATGAGATACAAGCTACATCAGTTTTTGGTGCAAGTGAATCGAAGGATAGCTGTCAAAAACCA GAAGTTGGGATGGAATTCTCTTCTGAAGAGGAGGCTTACAAATTTTACACAAGTTATGCAAATAAGATTGGTTTCAGAACAAGAAAAGGGAAGGTGCAAC GATTGTCCAACGGAACCATTAGAAAAAGATTCCTTTTTTGTTCGAAACAAGGGTTTCGATTGAAGAAACAAGCTGACAAGATAACGAAGTACAAGAGGAA AGAAACAAGAACAGGTTGTGATGCCAAGATCCAGTTTTCAGTTGAAAATGGAAAATGGGTGGTCTCGCAATTTTCACAAGAGCACAATCATCACCTTGAA GATCGTAGGCATATCACAAGATCATGCACTAAAACGTCCGAGGCTCACTTGATTCACACCGGAAATAACGCACAGATGGCAATGGATGCTGGAGCTCCAA AATGCACAGAATTATGCAATATGGTTTGGAGTACACATCCTAAAGAAGTTCAAATCCTGTTAAATTATCTGAGGCGTCTGCAGGTGGAGGATCTGTCACT CTTCTATGCAGTTCAGCTTGACTCTGATAATCGCCTGAAAAATCTTTTCTGGAGAGATGGGAGGTCCATGGTAGACTATGACTACTTCGGCGATGTTCTT ATTTTGGACACAACTTTTAGGATGGACAAATATGAGATGATCTGTGCACCATTTTGGGGACTCAATCACCATCGGCAGTATGTCATGTTTGGCTGTGCTT TCTTGCTTGATGAAAGCAAGGAGTCATTTGTGTGGTTGTTCGAGACTTTTTTGGAAGCAATGGGAAGAAAACAACCAAAAACAATTGTTACTGATGAGAA CCAAGTGATGGTTGATGCAGTAAAAGTGGTGTTGCTGGATGCAGAACATCTGTTTGGTGTGTGGTTTATCCGCCAAAAAGCATTAAAGCACCTATCTGCA TTTTATAGTCAACCTGATTTTGTCAACATCTTCAACGAATGCGTCTCTTATTGCCAAAATGAGGAAGAATTCGAGTCAAAGTGGGATTTTCTACTCAAGA AATTCAATCTCTGTGAAAACGCCTGGCTGAACAATCTATACTTGTCTCGAGAAAGATGGGCTAATGTCTTCCACAAGAAAACTTTCTCCGCAGGCATAAG ATGGTGCAACGACAATGTCAATGTTTTCCAAAATTCAACAAGTGACACCATGGACCTGTCAATGTTTGTTCATCAGTATCTTAAAGTGGTAGAAACACAG CGCTCGGCAGAGCTAAATGAAGATATGCGTTGCCGTGAAACAACCAAGGTGTTAAGTTCCAGCGCGATGGAGAAACAAGCAGCCAATATATACACCCGCA CAATCTTCAAAATATTTCAAGAAGAATTAATAACATGTTTGTCAGTGGCCATAGAAGAAATTGCTAGTGATGGGACGAATGCTACATTCAAGCTGACAGA GGAAGGCCAGAAGGAGAGCATTGTTGAATTCAGCTGTCTGGATTCTAATCTTGCATGTAGCTGTAGGAAATATGAATCAGAAGGAATTTTATGTGTCCAT GCCTTAAAGGTACTCAATGCAAGAAATGTCTTTCGTATACCAGACCAGTACATGTTAAAGCGGTGGACAAAATGTGCTAAAGATAGTGTGCCAGAAGATG AGCATGTTCAAAAGTTGGCTGGCCAGAAGCAACAGCCAATGAGTTTGCTTTTGAAAAAAGCTTTGGATGTCATTTATAAAACCTCTGCATTTGAGGATTG CCAGAAAATAGCTATGCATTATTTAGACGAGGCATCAAAAAAGGTAGAAGCTGCGCTAAGATCAAAGAAACACAGATCATTTTAA
AA sequence Show only first row Show all	>Potri.016G058700.2 pacid=42809474 polypeptide=Potri.016G058700.2.p locus=Potri.016G058700 ID=Potri.016G058700.2.v4.1 annot-version=v4.1 MVEAVSGNDPQTSYSAQGSNESLRDNLVSRNQVEAAANLFSKNQDEASTSEWAGNGNGLDFTCDSSVLREGISGLDGDWRQGLDEPSKYTKKRRNTDVSS SSALNSASDLSLSEALSQISKDLGLSSPSLCSGEEEEDKENEEADSPESHGENLQAELALHHLECYGDDMLSSDSNEDEDEIQATSVFGASESKDSCQKP EVGMEFSSEEEAYKFYTSYANKIGFRTRKGKVQRLSNGTIRKRFLFCSKQGFRLKKQADKITKYKRKETRTGCDAKIQFSVENGKWVVSQFSQEHNHHLE DRRHITRSCTKTSEAHLIHTGNNAQMAMDAGAPKCTELCNMVWSTHPKEVQILLNYLRRLQVEDLSLFYAVQLDSDNRLKNLFWRDGRSMVDYDYFGDVL ILDTTFRMDKYEMICAPFWGLNHHRQYVMFGCAFLLDESKESFVWLFETFLEAMGRKQPKTIVTDENQVMVDAVKVVLLDAEHLFGVWFIRQKALKHLSA FYSQPDFVNIFNECVSYCQNEEEFESKWDFLLKKFNLCENAWLNNLYLSRERWANVFHKKTFSAGIRWCNDNVNVFQNSTSDTMDLSMFVHQYLKVVETQ RSAELNEDMRCRETTKVLSSSAMEKQAANIYTRTIFKIFQEELITCLSVAIEEIASDGTNATFKLTEEGQKESIVEFSCLDSNLACSCRKYESEGILCVH ALKVLNARNVFRIPDQYMLKRWTKCAKDSVPEDEHVQKLAGQKQQPMSLLLKKALDVIYKTSAFEDCQKIAMHYLDEASKKVEAALRSKKHRSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.016G058700 [exp]	0	1
AT2G43010	bHLH	SRL2, PIF4, AtP...	phytochrome interacting factor...		Potri.002G055400 [exp]	1.00	0.8741
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Potri.002G107700 [exp]	3.87	0.8393
AT4G31040			CemA-like proton extrusion pro...		Potri.006G080100 [exp]	6.63	0.8670
AT2G38570			unknown protein		Potri.006G109500 [exp]	10.09	0.8564
AT5G38640			NagB/RpiA/CoA transferase-like...		Potri.004G103700 [exp]	12.72	0.8259
AT5G62620			Galactosyltransferase family p...		Potri.012G072400 [exp]	16.88	0.8590
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.013G154300 [exp]	19.44	0.8526
AT5G22640		EMB1211	embryo defective 1211, MORN (M...		Potri.009G149100 [exp]	20.09	0.8614
AT1G75010		ARC3	ACCUMULATION AND REPLICATION O...		Potri.010G099300 [exp]	21.02	0.8261
AT5G18140			Chaperone DnaJ-domain superfam...		Potri.013G058100 [exp]	24.24	0.8109

Compare expression of checked genes

Potri.016G058700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.