Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18960 54 / 4e-08 FAR1_related FRS12 FAR1-related sequence 12 (.1) AT3G06250 52 / 1e-07 FAR1_related FRS7 FAR1-related sequence 7 (.1) AT1G10240 50 / 6e-07 FAR1_related FRS11 FAR1-related sequence 11 (.1) AT5G28530 49 / 1e-06 FAR1_related FRS10 FAR1-related sequence 10 (.1) AT1G80010 47 / 9e-06 FAR1_related FRS8 FAR1-related sequence 8 (.1) AT3G59470 46 / 9e-06 FAR1_related Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) AT3G07500 44 / 4e-05 FAR1_related Far-red impaired responsive (FAR1) family protein (.1) AT4G19990 44 / 4e-05 FAR1_related FRS1 FAR1-related sequence 1 (.1.2) AT4G12850 40 / 0.0003 FAR1_related Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2), Far-red impaired responsive (FAR1) family protein (.3) AT1G52520 42 / 0.0004 FAR1_related FRS6 FAR1-related sequence 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G058700 [exp] 109 / 4e-27 AT4G38180 345 / 8e-107 FAR1-related sequence 5 (.1) Potri.008G199300 [exp] 56 / 8e-09 AT3G06250 985 / 0.0 FAR1-related sequence 7 (.1) Potri.010G029000 [exp] 55 / 1e-08 AT3G06250 1012 / 0.0 FAR1-related sequence 7 (.1) Potri.007G128700 [exp] 50 / 2e-07 AT3G07500 138 / 2e-40 Far-red impaired responsive (FAR1) family protein (.1) Potri.016G007300 [exp] 51 / 3e-07 AT5G28530 819 / 0.0 FAR1-related sequence 10 (.1) Potri.007G128900 [exp] 50 / 3e-07 AT3G07500 154 / 2e-46 Far-red impaired responsive (FAR1) family protein (.1) Potri.007G129500 [exp] 49 / 1e-06 AT3G59470 260 / 9e-88 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Potri.004G227600 [exp] 49 / 2e-06 AT1G10240 1199 / 0.0 FAR1-related sequence 11 (.1) Potri.017G029100 [exp] 48 / 2e-06 AT3G59470 323 / 1e-112 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2)
Flax homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03101 [poplar] [flax] FAR1 FAR1 DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.016G059150.1 pacid=42809836 polypeptide=Potri.016G059150.1.p locus=Potri.016G059150 ID=Potri.016G059150.1.v4.1 annot-version=v4.1 ATGGCTGAAACACTTGATCTTAATTCTGGACCTGACCTTTCAACCAGCCCTACTGATCCCTCTCAACCTTCAGATGCTAACTTCTGGTACCAAATACTCA CAAGTAATCAAGAGGACCTGCAGCATACTCTGCGGCCTTCAACTTCGAGGCTGGATAGTGAATGGGGACATGTTTTTGACAAGTCCTCTAAGAAGAAGAG ACAGAGGATGGACACAAACAGCGGTGCTGGCAGTGGAGTAAATAGTGCTAGTGATCTATCAGAGGCTCTGTCTGCTGTTTCTGCAGCTCTGAGTTTATCC TCGTCTGCTTCTTCTGGAGTAAAAGATCAATGGGAGAAAGAGGGGGCTGAATTCATTAGGAAAGGCGTTGAAGAACTTCCAGATGAGATGGTGGATAATT CAAACGAAAACCCAATCAGTTTTGACATTCAATCATTGCCGTCAGAGAGCAGTGAGGATGATGTGCCGCTATCAGATAGCAATGAAAATAACAGTGAGAT ACCGTCTACGTGGGCTTCTGAAGCGAATGGAGAAACATGGAAAAGTAATTCTCAAGTGCCAGAACTTGGGATGGTCTTCTCTTCCGAGGAGGAGGCTTAT GAATTTTACAAAAGCTATGCCGATGAAATTGGTTTCAACGTAAGAAAAGGGAAGGTGCAACGGTTGACAAACAAAGCTATTAGAAAACGGTACCTTTTCT GTTCAAGAGAAGGGTTTCGACTACAGAAGAAACTCTAA
AA sequence Show only first row Show all	>Potri.016G059150.1 pacid=42809836 polypeptide=Potri.016G059150.1.p locus=Potri.016G059150 ID=Potri.016G059150.1.v4.1 annot-version=v4.1 MAETLDLNSGPDLSTSPTDPSQPSDANFWYQILTSNQEDLQHTLRPSTSRLDSEWGHVFDKSSKKKRQRMDTNSGAGSGVNSASDLSEALSAVSAALSLS SSASSGVKDQWEKEGAEFIRKGVEELPDEMVDNSNENPISFDIQSLPSESSEDDVPLSDSNENNSEIPSTWASEANGETWKSNSQVPELGMVFSSEEEAY EFYKSYADEIGFNVRKGKVQRLTNKAIRKRYLFCSREGFRLQKKL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18960	FAR1_related	FRS12	FAR1-related sequence 12 (.1)		Potri.016G059150 [exp]	0	1
AT1G53440			Leucine-rich repeat transmembr...		Potri.001G385300 [exp]	5.09	0.8763
AT1G13920			Remorin family protein (.1)		Potri.010G160900 [exp]	6.00	0.8731
AT3G14470			NB-ARC domain-containing disea...		Potri.004G170232 [exp]	7.21	0.8450
AT2G39490			F-box family protein (.1)		Potri.008G050800 [exp]	8.00	0.8291
AT1G34320			Protein of unknown function (D...		Potri.001G305800 [exp]	9.89	0.8305
AT4G31980			unknown protein		Potri.003G209000 [exp]	10.39	0.8408
AT3G42670		CLSY1, CLSY, CH...	CLASSY 1, CLASSY1, chromatin r...		Potri.008G073500 [exp]	12.00	0.8249
AT3G12970			unknown protein		Potri.005G098300 [exp]	14.07	0.8264
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Potri.018G020200 [exp]	14.42	0.8240
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.018G087100 [exp]	15.16	0.8267

Compare expression of checked genes

Potri.016G059150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.