Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06700 658 / 0 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) AT3G12060 595 / 0 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT1G60790 446 / 8e-151 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) AT5G49340 426 / 3e-144 TBL4 TRICHOME BIREFRINGENCE-LIKE 4 (.1) AT5G20590 400 / 1e-133 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT3G62390 368 / 2e-121 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT5G19160 313 / 3e-100 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT3G06080 311 / 3e-99 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G06230 293 / 1e-93 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2) AT1G29050 285 / 2e-90 TBL38 TRICHOME BIREFRINGENCE-LIKE 38 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G193900 [exp] 1014 / 0 AT5G06700 681 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.001G010900 [exp] 518 / 5e-179 AT5G06700 472 / 5e-161 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.010G043300 [exp] 456 / 8e-155 AT1G60790 604 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Potri.008G108500 [exp] 441 / 5e-150 AT5G49340 460 / 7e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.T171301 [exp] 441 / 6e-150 AT5G49340 461 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.006G071500 [exp] 412 / 5e-138 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.018G133000 [exp] 404 / 9e-135 AT5G20590 606 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.002G195800 [exp] 390 / 5e-129 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.002G054400 [exp] 317 / 1e-101 AT3G06080 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021066 [exp] 664 / 0 AT5G06700 671 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Lus10004159 [exp] 506 / 4e-174 AT5G06700 552 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Lus10013035 [exp] 449 / 1e-151 AT1G60790 595 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10029126 [exp] 412 / 1e-137 AT1G60790 527 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10011932 [exp] 408 / 5e-137 AT5G20590 543 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10027637 [exp] 402 / 7e-135 AT5G20590 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10037726 [exp] 390 / 6e-130 AT5G49340 435 / 3e-150 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Lus10002430 [exp] 375 / 1e-123 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10034039 [exp] 313 / 2e-100 AT3G06080 553 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10034041 [exp] 313 / 4e-100 AT5G19160 605 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p CL0264 [poplar] [flax] PF14416 [poplar] [flax] PMR5N PMR5 N terminal Domain
Representative CDS sequence Show only first row Show all	>Potri.016G059300.3 pacid=42810596 polypeptide=Potri.016G059300.3.p locus=Potri.016G059300 ID=Potri.016G059300.3.v4.1 annot-version=v4.1 ATGGCTGATACAACAGCCAGCAAGCACCTTTCTTCTACTAATGGAGGAAACATCATTACAGATATGAAGAACCTATCTTCTCTTCTAAAAACAAGGACAA CTGTGACTTTTGCTTATGGGTTCATGCTTGCTTTTGTTGCTTTCACCATTTTCTTGGCATTTAGTCCTTCTCCAAACTCATCTTCTCCTTGGTTCACTAA TATTTTCAGTAGCAGTGCTAGCACTAGTACTGCTTCTCCTGATTCTTCTATTTTCTCTTACTTATTACCCAACAACACACCTACAACAACCACCACCCCA CGAGGGCAAGGCCATGATTCCTCTTCATTGCCTTCACAAAACACCACCAGAATTAATAACACCTTGTCTCAGCCACCCAATACCAAGGCAGAAGCTAAAG TCCCACCAAGTGCAAAAAACCTCACTCCAAGCACAGTTTTGCAACCACACCAGACCGCAAATTCTTCAATTGTCATTAAAGAGCCGGACTTTGCAAATAA TCAAACTCAAACCGCACCGAATTCTAATGAAGGTCAAGTCTTAAAGCCAAATCAAACCACAGTTGCAGTCCCAAGTACAACCCAATTAGCAGCAAATCAA AGTGAAAATACCCCCACAAAGTCAGGCCCTTTCGTGAAGAAAAATTCTGGGGATCAAGAGAAAGGAGATGCTGTCAAGAGTGTGGCATCGAATTTCACTG CTTCACATTTGAAGAAACAAAGTAATGTGACCAAACAGAGCAATGAGACTGATTCAGGGGTGGATGTGAAGCAGGGGATTGATGATTTGGTGAATTGCGA TTTTTTTGATGGGAAATGGGTTAAAGATGATTCATATCCACTTTACAGACCTGGGTCTTGTTCATTGATTGATGAGCAGTTTAATTGTATACTTAATGGC AGACCTGACAAAGACTACCAGAAATATAAATGGAGGCCTAAAGGGTGCACTTTACCAAGGTTGAATCCTGGTCATATGCTGGACATGTTGAGAGGAAAGC GGCTTGTTTTCGTCGGTGATTCCCTGAACAGGAATATGTGGGAATCTCTGGTTTGTATTCTAAAAAGCTCAGTGAAAGATCAAAGCAAGGTTTTTGAAGT GAATGGAAGGGTCCATTTTCGAGGGGAAGCTTCATACTCTTTTCTATTCAAAGATTATAACTGCACAGTTGAGTTCTTTGTATCGCCTTTCTTAGTTCAA GAATGGGAATTGCCTGAAAAAGATGGATCAAAGAAGGAGACACTTCGGCTTGATTTGGTGGGACGGTCTTCTAGTCAATATAAAGGTGCAGATGTCATCG TCTTCAATACTGGACACTGGTGGACGCATGATAAAACTTCCAAAGGGAAAGATTATTACCAAGAAGGGAGTCATGTGTATGATGAGTTGAATGTTCTGGA GGCCTTTCGAAAAGCTTTGACAACATGGGCCAGATGGGTTGATGCAAATGTAAATCCTATGAAATCTCTGGTGCTCTTTAGAGGATATTCTGCTTCCCAT TTCAGTGGTGGACAATGGAATTCTGGTGGGCAATGTGACAGCGAGGTTGAGCCCATAAAAAATGTTACATACCTTAGGGAGTATCCACCAAAGATGCTGG TTCTTGAGAAAGTGCTGAGAAATATGAAAACCCATGTCAGATACCTAAATGTCACACAAATGACCGATTTCCGGAAGGATGGTCACCCTTCAGTGTACAG GAAGCAGAACTTGTCTCCAGTGGAAAGGAAATCACCATTGCTTTTCCAAGACTGCAGCCATTGGTGTCTTCCTGGTGTGCCGGATGCATGGAATGAGATT CTCTATGCGGAGCTTTTAGTAAACGAGAAAAAGAAGCAGCAAACGCAGAAGAGGCAATAG
AA sequence Show only first row Show all	>Potri.016G059300.3 pacid=42810596 polypeptide=Potri.016G059300.3.p locus=Potri.016G059300 ID=Potri.016G059300.3.v4.1 annot-version=v4.1 MADTTASKHLSSTNGGNIITDMKNLSSLLKTRTTVTFAYGFMLAFVAFTIFLAFSPSPNSSSPWFTNIFSSSASTSTASPDSSIFSYLLPNNTPTTTTTP RGQGHDSSSLPSQNTTRINNTLSQPPNTKAEAKVPPSAKNLTPSTVLQPHQTANSSIVIKEPDFANNQTQTAPNSNEGQVLKPNQTTVAVPSTTQLAANQ SENTPTKSGPFVKKNSGDQEKGDAVKSVASNFTASHLKKQSNVTKQSNETDSGVDVKQGIDDLVNCDFFDGKWVKDDSYPLYRPGSCSLIDEQFNCILNG RPDKDYQKYKWRPKGCTLPRLNPGHMLDMLRGKRLVFVGDSLNRNMWESLVCILKSSVKDQSKVFEVNGRVHFRGEASYSFLFKDYNCTVEFFVSPFLVQ EWELPEKDGSKKETLRLDLVGRSSSQYKGADVIVFNTGHWWTHDKTSKGKDYYQEGSHVYDELNVLEAFRKALTTWARWVDANVNPMKSLVLFRGYSASH FSGGQWNSGGQCDSEVEPIKNVTYLREYPPKMLVLEKVLRNMKTHVRYLNVTQMTDFRKDGHPSVYRKQNLSPVERKSPLLFQDCSHWCLPGVPDAWNEI LYAELLVNEKKKQQTQKRQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Potri.016G059300 [exp]	0	1
AT1G72830	CCAAT	NF-YA3, ATHAP2C...	"nuclear factor Y, subunit A3"...		Potri.006G145100 [exp]	4.89	0.8292	HAP2.6
AT3G17100	bHLH	bHLH147, AIF3	sequence-specific DNA binding ...		Potri.008G103500 [exp]	5.83	0.8182
					Potri.019G014314 [exp]	8.83	0.8109
AT5G07610			F-box family protein (.1)		Potri.005G043500 [exp]	12.00	0.8076
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Potri.001G406500 [exp]	12.96	0.7664
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014360 [exp]	20.59	0.7131
AT5G63260	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.012G092500 [exp]	24.06	0.6580
					Potri.010G002600 [exp]	24.89	0.7336
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.018G023900 [exp]	24.91	0.7681
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014312 [exp]	25.49	0.7658

Compare expression of checked genes

Potri.016G059300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.