Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41970 600 / 0 Protein kinase superfamily protein (.1) AT3G59350 472 / 2e-167 Protein kinase superfamily protein (.1.2.3) AT1G06700 463 / 3e-164 Protein kinase superfamily protein (.1.2) AT2G30740 459 / 2e-162 Protein kinase superfamily protein (.1) AT2G43230 455 / 2e-160 Protein kinase superfamily protein (.1.2) AT2G47060 451 / 3e-159 PTI1-4 Pto-interacting 1-4, Protein kinase superfamily protein (.1.2.3.4.5) AT3G62220 444 / 2e-156 Protein kinase superfamily protein (.1) AT3G17410 441 / 2e-155 Protein kinase superfamily protein (.1) AT2G30730 429 / 3e-151 Protein kinase superfamily protein (.1) AT1G48210 430 / 4e-151 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G194000 [exp] 644 / 0 AT2G41970 586 / 0.0 Protein kinase superfamily protein (.1) Potri.017G036300 [exp] 473 / 4e-167 AT3G59350 632 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.007G124000 [exp] 471 / 4e-167 AT2G43230 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G188600 [exp] 459 / 2e-162 AT3G62220 595 / 0.0 Protein kinase superfamily protein (.1) Potri.014G114200 [exp] 454 / 2e-160 AT3G62220 577 / 0.0 Protein kinase superfamily protein (.1) Potri.010G001500 [exp] 416 / 2e-145 AT1G48210 494 / 3e-176 Protein kinase superfamily protein (.1.2) Potri.014G194300 [exp] 260 / 6e-80 AT2G20300 966 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Potri.013G025700 [exp] 250 / 2e-79 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.002G254600 [exp] 256 / 2e-78 AT2G20300 947 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021070 [exp] 577 / 0 AT2G41970 562 / 0.0 Protein kinase superfamily protein (.1) Lus10017242 [exp] 577 / 0 AT2G41970 560 / 0.0 Protein kinase superfamily protein (.1) Lus10016247 [exp] 570 / 0 AT2G41970 563 / 0.0 Protein kinase superfamily protein (.1) Lus10029295 [exp] 568 / 0 AT2G41970 562 / 0.0 Protein kinase superfamily protein (.1) Lus10025496 [exp] 478 / 1e-169 AT3G59350 610 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10026706 [exp] 476 / 4e-169 AT3G59350 613 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10026708 [exp] 474 / 9e-168 AT3G59350 625 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10025498 [exp] 473 / 4e-167 AT3G59350 630 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10009983 [exp] 468 / 1e-165 AT3G62220 586 / 0.0 Protein kinase superfamily protein (.1) Lus10010072 [exp] 466 / 4e-165 AT3G62220 592 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.016G059600.1 pacid=42810343 polypeptide=Potri.016G059600.1.p locus=Potri.016G059600 ID=Potri.016G059600.1.v4.1 annot-version=v4.1 ATGTTCTGTTGCGGTGGTAATGAGGAGGAACCACATGGCCCGCCGGCTAATCAATACACAGCCCCACCTAAAGGAGCGAATATATATGGCGGCGGCGGCA GCGCGAGAGGAGAGCCAAGAGGTGCCAATCAGGCCAGAAGTGGAGCTCCACAGAAGGTCTTACCCATTGAAATCCCATCAATACCATTGGATGAGTTAAA TAGGATGACAGGAAACTTTGGTACCAAGGCTTTGATTGGAGAAGGTTCTTACGGGCGAGTTTTTTATGCCAAGTTAAAAGATGGCATGCCTGCTGCAATT AAGAAGCTAGACACCAGCAGTTCACAAGAACCAGATTCTGATTTTGAAGCACAGTTGTCTGTCGTTTCAAGACTTAAACATGAGCACTTTGTGGAGTTGA CGGGGTATTGTTTGGAGGCAAACAACCGAATCTTGGTTTATCAGTTTGCAGTGATGGGTTCTTTACATGATGTATTACATGGGAGGAAGGGCGTAGAAGG GGCTGAACCAGGTCCAGTTCTGAATTGGAACCAGAGAGTTAAAATTGCTTATGGTGCTGCAAAAGGCCTCGAGTATCTGCACGAAAAGGTTCAGCCTTCT ATAGTTCATCGCGATGTTAGATCAAGCAATGTCCTACTCTTCGGTGATTTCTTGTCCAAAATTGCCGATTTCAACCTGTCCAATGCCAATTCTGACACTG CTGCTCGACTGCATTCGACTAGGGTCTTGGGAACATTTGGCTACCATGCTCCAGAGTATGCCATGACCGGGCAGATAACTCAGAAAAGTGATGTTTACAG TTTCGGAGTTGTTCTTCTAGAATTGCTGACAGGAAGAAAGCCAGTAGACCATACAATGCCGAAAGGGCAGCAGAGTCTTGTTACCTGGGCAACGCCAAGA CTGAGTGAGGATAAAGTGAAGCAATGCGTGGATCCCAAGCTAAACAATGATTACCCTCCAAAGGCAGTTGCCAAGTTAGCAGCAGTTGCAGCACTTTGTG TTCAGTATGAAGCGGACTTCAGGCCAAACATGACAATTGTTGTCAAGGCTCTTCAGCCACTTCTCAACTCAAAACCAGCAGGGCCAGAGTCTCAGGCATA A
AA sequence Show only first row Show all	>Potri.016G059600.1 pacid=42810343 polypeptide=Potri.016G059600.1.p locus=Potri.016G059600 ID=Potri.016G059600.1.v4.1 annot-version=v4.1 MFCCGGNEEEPHGPPANQYTAPPKGANIYGGGGSARGEPRGANQARSGAPQKVLPIEIPSIPLDELNRMTGNFGTKALIGEGSYGRVFYAKLKDGMPAAI KKLDTSSSQEPDSDFEAQLSVVSRLKHEHFVELTGYCLEANNRILVYQFAVMGSLHDVLHGRKGVEGAEPGPVLNWNQRVKIAYGAAKGLEYLHEKVQPS IVHRDVRSSNVLLFGDFLSKIADFNLSNANSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPR LSEDKVKQCVDPKLNNDYPPKAVAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNSKPAGPESQA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41970			Protein kinase superfamily pro...		Potri.016G059600 [exp]	0	1
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.009G108600 [exp]	2.82	0.9033
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Potri.009G108832 [exp]	4.24	0.8897
AT1G08530			unknown protein		Potri.019G030400 [exp]	5.65	0.8760
					Potri.017G019000 [exp]	21.63	0.8710
AT1G11300			protein serine/threonine kinas...		Potri.004G027533 [exp]	23.66	0.8741
AT1G16000			unknown protein		Potri.004G051201 [exp]	31.60	0.8555
AT3G10870		ATMES17, MES17	ARABIDOPSIS THALIANA METHYL ES...		Potri.019G131100 [exp]	46.56	0.8723
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Potri.003G142500 [exp]	46.86	0.8622
AT1G78590		NADK3, ATNADK-3	ARABIDOPSIS THALIANA NADH KINA...		Potri.011G104400 [exp]	50.29	0.8087
					Potri.006G028101 [exp]	59.80	0.8516

Compare expression of checked genes

Potri.016G059600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.