Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58040 548 / 0 SINAT2 seven in absentia of Arabidopsis 2 (.1) AT2G41980 532 / 0 Protein with RING/U-box and TRAF-like domains (.1) AT3G61790 468 / 1e-167 Protein with RING/U-box and TRAF-like domains (.1) AT4G27880 454 / 6e-162 Protein with RING/U-box and TRAF-like domains (.1) AT5G53360 366 / 8e-129 TRAF-like superfamily protein (.1) AT3G13672 235 / 2e-77 TRAF-like superfamily protein (.1.2) AT5G37870 99 / 7e-24 Protein with RING/U-box and TRAF-like domains (.1) AT5G37890 95 / 2e-22 Protein with RING/U-box and TRAF-like domains (.1) AT5G37930 95 / 3e-22 Protein with RING/U-box and TRAF-like domains (.1) AT5G62800 93 / 2e-21 Protein with RING/U-box and TRAF-like domains (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G194100 [exp] 616 / 0 AT3G58040 560 / 0.0 seven in absentia of Arabidopsis 2 (.1) Potri.003G198600 [exp] 470 / 9e-169 AT3G61790 473 / 2e-169 Protein with RING/U-box and TRAF-like domains (.1) Potri.T126006 [exp] 470 / 9e-169 AT3G61790 473 / 2e-169 Protein with RING/U-box and TRAF-like domains (.1) Potri.002G171500 [exp] 468 / 1e-167 AT3G61790 558 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.014G099200 [exp] 468 / 2e-167 AT3G61790 551 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.003G215400 [exp] 466 / 5e-167 AT3G58040 471 / 4e-169 seven in absentia of Arabidopsis 2 (.1) Potri.012G015500 [exp] 465 / 2e-166 AT4G27880 542 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.015G013000 [exp] 462 / 4e-165 AT4G27880 546 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.001G010500 [exp] 450 / 4e-161 AT3G58040 455 / 3e-163 seven in absentia of Arabidopsis 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013739 [exp] 494 / 6e-178 AT3G58040 493 / 6e-178 seven in absentia of Arabidopsis 2 (.1) Lus10039202 [exp] 493 / 2e-177 AT3G58040 488 / 1e-175 seven in absentia of Arabidopsis 2 (.1) Lus10022405 [exp] 465 / 4e-166 AT4G27880 553 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10018110 [exp] 465 / 4e-166 AT4G27880 553 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10002761 [exp] 460 / 6e-164 AT3G61790 462 / 1e-164 Protein with RING/U-box and TRAF-like domains (.1) Lus10016348 [exp] 457 / 1e-162 AT3G61790 459 / 7e-163 Protein with RING/U-box and TRAF-like domains (.1) Lus10004001 [exp] 450 / 1e-160 AT3G61790 525 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10030248 [exp] 444 / 9e-158 AT3G61790 514 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10009111 [exp] 60 / 2e-10 AT5G37930 134 / 5e-38 Protein with RING/U-box and TRAF-like domains (.1) Lus10028535 [exp] 59 / 3e-10 AT5G37930 134 / 7e-38 Protein with RING/U-box and TRAF-like domains (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0389 [poplar] [flax] TRAF PF03145 [poplar] [flax] Sina Seven in absentia protein family
Representative CDS sequence Show only first row Show all	>Potri.016G059700.1 pacid=42808905 polypeptide=Potri.016G059700.1.p locus=Potri.016G059700 ID=Potri.016G059700.1.v4.1 annot-version=v4.1 ATGGCTCCTGGGGGCAGTGCTTTTAAAGAAGTTCTTGAATTAGTTGCAGAATGTGACATTGCAACGTCAAAATCAGAAAATAACATTGCACCTACAAAAG GTACTGTTGTTCTGAGTGGAAAGCACGGGGTTTATTCAAACAATGGTGTCCATGAACTCCTTGAGTGTCCTGTCTGTACAAATTTAATGTATCCTCCAAT TCACCAGTGCCCAAATGGACACACTCTATGTTCAGCCTGCAAGCTTAGAGTACATAACTGTTGCCCTACTTGCCGCTATGATCTTGGAAATATACGGTGC TTGGCTTTGGAGAAAGTTGCAGAATCATTGGAGCTGCCCTGCAAATACCAGAGTTTAGGATGTCTTGATGTTTTCCCATACTACAGCAAGCTCAAGCATG AGCAACACTGTCGATTTCGTCCATATAGCTGCCCTTATGCTGGGTCTGAGTGTTCTGTCACTGGTGACATCCCTGCCCTTGCTGCCCATCTCAAGGACGA TCACAAGGTTGATATGCATGATGGGTGTACCTTCAATCATCGTTATGTCAAATCAAATCCACATGAAGTTGAAAATGCCACATGGATGCTTACTGTATTT AACTGTTTTGGAAGACAGTTCTGCTTGCATTTTGAGGCTTTCCAACTGGGCATGGCACCTGTCTATATGGCCTTCTTAAGGTTTATGGGTGATGATAATG AAGCAAAGAAATTCAGTTACAGCTTAGAAGTTGGTGGCAATGGCCGGAAACTGGTATGGCAAGGAATTCCCAGGAGCATCCGTGATAGTCACAGGAAAGT TCGCGATAGCCAGGATGGGCTTATTATTCAAAGGAATTTGGCTCTCTACTTCTCTGGTGGGGATAGGAAAGAGCTGAAGTTGAGGGTTACTGGTCGTGTA TGGAAAGAAGAATGA
AA sequence Show only first row Show all	>Potri.016G059700.1 pacid=42808905 polypeptide=Potri.016G059700.1.p locus=Potri.016G059700 ID=Potri.016G059700.1.v4.1 annot-version=v4.1 MAPGGSAFKEVLELVAECDIATSKSENNIAPTKGTVVLSGKHGVYSNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSACKLRVHNCCPTCRYDLGNIRC LALEKVAESLELPCKYQSLGCLDVFPYYSKLKHEQHCRFRPYSCPYAGSECSVTGDIPALAAHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVF NCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKKFSYSLEVGGNGRKLVWQGIPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGDRKELKLRVTGRV WKEE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58040		SINAT2	seven in absentia of Arabidops...		Potri.016G059700 [exp]	0	1
AT5G52430			hydroxyproline-rich glycoprote...		Potri.001G102200 [exp]	5.00	0.7266
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Potri.011G070900 [exp]	11.40	0.7061	Pt-TPS7.1
AT2G18700		ATTPSB, ATTPS11	TREHALOSE-6-PHOSPHATE SYNTHASE...		Potri.018G097700 [exp]	12.04	0.6993
AT5G45290			RING/U-box superfamily protein...		Potri.002G140500 [exp]	13.56	0.6400
AT1G14670			Endomembrane protein 70 protei...		Potri.012G042300 [exp]	14.00	0.6917
AT2G27310			F-box family protein (.1)		Potri.005G208200 [exp]	16.24	0.6691
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Potri.007G029400 [exp]	19.67	0.7018
AT1G17665			unknown protein		Potri.003G038600 [exp]	27.16	0.6974
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.012G002200 [exp]	27.71	0.6916	Pt-CNGC.2
AT4G29905			unknown protein		Potri.008G007932 [exp]	28.28	0.6499

Compare expression of checked genes

Potri.016G059700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.