Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12570 733 / 0 UPL5 ubiquitin protein ligase 5 (.1) AT1G55860 136 / 2e-32 UPL1 ubiquitin-protein ligase 1 (.1.2) AT1G70320 134 / 9e-32 UPL2 ubiquitin-protein ligase 2 (.1) AT3G17205 88 / 1e-17 UPL6 ubiquitin protein ligase 6 (.1.2.3) AT1G53930 62 / 3e-11 Ubiquitin-like superfamily protein (.1) AT2G35635 62 / 4e-11 UBQ7, RUB2 RELATED TO UBIQUITIN 2, ubiquitin 7 (.1) AT4G05050 62 / 4e-11 UBQ11 ubiquitin 11 (.1.2.3.4) AT2G47110 62 / 4e-11 UBQ6 ubiquitin 6 (.1.2) AT3G62250 62 / 4e-11 UBQ5 ubiquitin 5 (.1) AT2G36170 62 / 4e-11 Ubiquitin supergroup;Ribosomal protein L40e (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G011701 [exp] 1460 / 0 AT4G12570 842 / 0.0 ubiquitin protein ligase 5 (.1) Potri.016G012900 [exp] 1356 / 0 AT4G12570 853 / 0.0 ubiquitin protein ligase 5 (.1) Potri.002G110500 [exp] 140 / 2e-33 AT1G55860 1125 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.001G368600 [exp] 129 / 3e-30 AT1G55860 4297 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.011G094100 [exp] 127 / 1e-29 AT1G55860 4187 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.016G096500 [exp] 100 / 2e-21 AT3G53090 1447 / 0.0 ubiquitin-protein ligase 7 (.1.2) Potri.010G150000 [exp] 84 / 2e-16 AT3G17205 1506 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Potri.008G101300 [exp] 81 / 2e-15 AT3G17205 1432 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Potri.016G077000 [exp] 62 / 2e-11 AT3G52590 194 / 1e-65 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010493 [exp] 990 / 0 AT4G12570 830 / 0.0 ubiquitin protein ligase 5 (.1) Lus10003792 [exp] 481 / 2e-164 AT4G12570 409 / 3e-136 ubiquitin protein ligase 5 (.1) Lus10027324 [exp] 385 / 8e-127 AT4G12570 373 / 1e-121 ubiquitin protein ligase 5 (.1) Lus10032830 [exp] 138 / 6e-33 AT1G55860 1189 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10002605 [exp] 132 / 5e-31 AT1G55860 1128 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10032589 [exp] 128 / 8e-30 AT1G55860 4402 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10035589 [exp] 93 / 6e-19 AT3G53090 1385 / 0.0 ubiquitin-protein ligase 7 (.1.2) Lus10039026 [exp] 83 / 2e-18 AT4G12570 97 / 7e-24 ubiquitin protein ligase 5 (.1) Lus10027323 [exp] 82 / 9e-17 AT4G12570 72 / 5e-14 ubiquitin protein ligase 5 (.1) Lus10008636 [exp] 79 / 8e-15 AT3G53090 1270 / 0.0 ubiquitin-protein ligase 7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00240 [poplar] [flax] ubiquitin Ubiquitin family CL0552 [poplar] [flax] Hect PF00632 [poplar] [flax] HECT HECT-domain (ubiquitin-transferase)
Representative CDS sequence Show only first row Show all	>Potri.016G059800.3 pacid=42809267 polypeptide=Potri.016G059800.3.p locus=Potri.016G059800 ID=Potri.016G059800.3.v4.1 annot-version=v4.1 ATGCGTAAAGACGACACCGAGTCATCCACCGGCAACAATCAAGAACAACAACAACCTCCCTCCATCTCCTCCACCAATCAGCTCTCCACACGTGTCTCCG ACGCCTCCACCTCTTCATCATCCACCAACTTCCCCTCCTCCGCCATGCGGACCACCACACCCTCGCCGCTGCGGCTGTCGCAATCAAGACTCCAATTCTT TATCAGAATCATCTCCGAAGCAACTCATGTTGTGATCAACGCGAACTCGAGCGATTCTGTTAAATCACTCCACGAACGGATTCGCGTGATGACCGGAATT CCGGTGATAGAGCAGAGATTAATCTACTTAGGTAAGCAATTGCAATACGAGAACAAACTCTCCGATTACTCTATTGAGAACGATTCGATCCTTCATTTAG TCGGTCGAATGCGTAGCACTAGGCATCCTCGTACTTGTCAATTGATTAATGATATGGTTTCTTACATTTGTCGGATATGTAAGTCTATATTGCCGTGTGG TGCTCATCCTTACACGTCAAAGCATATAAAGGAGTTGATGAATGAGTTCTTTAGTTTGACGCCCAAGGATAATAACGAGGATGCTTCTGGGCACTTGGAT GTTTTTTTGTCCAATAGTGCACCGGCTGTGCTAGTTGCACTTTATGTTTCGAGTATTAAAGGGAATAAGGAGTGTGCGGAGGGTGCTATTAGGCACTTTT TGAATTCGTGTAGGATTTCGTTGCCTAAGAATTTGCATTTACAGTGTGTGCCGATTGTGATGGAGTTTTGTAATTTGTTGAGGAAGGTTGGGAGTGACGA TCCATTGTATGTTGTTTGTAGGAGTTGTCTTGGTTCGTTGTTGGAGAATGGTAGGGGTACGTGTGGGTGGAGGTATCATGGAGAGGAGGAGGGGAAGGGA GCTGTTGTGCAGGAGATTTTTCCATTTGTTAGTGAGTTGGGGAGCAAGTTGTTTAAAGATTTGATGGGGAGTGTGGTGGAGAGTATGGGGCCATCGGAGG CTGATGTTAAGGATTTTTCGGCGTTTTTGATACCATTGCATAGTGTGATCTCCGAGCAAAGGGGATTTAGGAGTCCAATTTCGATGCCTCTGAACAAGTT GGCGTTTCATTGTCCATTGTATGCGAAAGAAATTGAGCAGCTTCATGTGATATTCATTGATTTGCTGAATATTATGGAGAAATGTCTTGGGAAAATGCAG GATTCATCGAATTTGAAAACGAATGGAGAAAGTGAGTTGAATCATACAGGTTGGTCCCAATATTTGTTTATTTTGAAGGAGTTGAATAACATTGCTAAAC TTTATAAGGGTGCTGAGGAAAAGTTTTGGACGGTTTTGAGGCTTAGAAAAGCTTCCTTGTGTGCGCTGATTGTTAGATATGCTAAACAAACTGATGATCA TCAGTGGCTTCTTCAGCATAAGGATGTGACTGATTTTGAGTCTAGGAGGCATTTGGCTATGATGATGTTCCCTGAGGTGAAAGAAGATTACGAGGAGCTG CACGAGATGCTCATTGATCGGTCGCAATTGTTGGCGGAGTCATTTGAGTACATAATGCATGCCGAATCAGATACACTGCATGGTGGTTTATTTATGGAAT TTAAAAATGAGGAAGCAACTGGTCCTGGTGTATTGCGTGAGTGGTTTTTCTTGGTTACACAAGCTATATTTGATCCTCAAAATGCCCTTTTTGTGGCATG CCCAAGTGATCGTAGAAGGTTCTATCCTAATTCCGCATCTAAGGTGGATCCCATGCACCTTGATTATTTCACATTCTCTGGGCGAGTGATTGCGTTAGCT TTGATGCATAAAGTGCAAGTTGGCATTGTATTTGATCGTGTGTTTTTCTTGCAATTGGCTGGGATGCATATTTCTTTGGAAGACATACGGGATGCAGATC CATGCTTGTATAACAGCTGCAAACAGATTCTTCAGAGGGATCCTGAGTTCATTGATTCAAATGCTTTGGGGCTGACATTTGTCAGAGAAGTTGAGGAGCT AGGATCCATAAAAGTTGTGGAACTTTGCCCTGGTGGGAAAGGCATTGTTGTAAATAGCAAGAACCGGGAGAAATATGTCAATCTGCTCATTCAACATCGC TTTGTCACATCTATTTCTGACCCTGTATCTCGATTTGCACGTGGTTTTGCTGATATTCTTTCAAACCCTGGGGAACAGAAGCTCTTCTTCCGAAGCTTGG AGCTCGAAGATCTTGATTGGATGCTATATGGAAGTGAAAGTGCTATATGTGTGGAAGACTGGAAGGCTCACACTGAGTACAGCAGCTTAATTGAAACTGA TCCTCAGATATCCTGGTTCTGGAAGGTATGCTCTTGCACGCTTGCATTCATGTTATATCTCAAATCTAAACTTCTTTTTTTTTTTTGGCGGTATAGGTTC TTCTTCATCTCATATTTCTAG
AA sequence Show only first row Show all	>Potri.016G059800.3 pacid=42809267 polypeptide=Potri.016G059800.3.p locus=Potri.016G059800 ID=Potri.016G059800.3.v4.1 annot-version=v4.1 MRKDDTESSTGNNQEQQQPPSISSTNQLSTRVSDASTSSSSTNFPSSAMRTTTPSPLRLSQSRLQFFIRIISEATHVVINANSSDSVKSLHERIRVMTGI PVIEQRLIYLGKQLQYENKLSDYSIENDSILHLVGRMRSTRHPRTCQLINDMVSYICRICKSILPCGAHPYTSKHIKELMNEFFSLTPKDNNEDASGHLD VFLSNSAPAVLVALYVSSIKGNKECAEGAIRHFLNSCRISLPKNLHLQCVPIVMEFCNLLRKVGSDDPLYVVCRSCLGSLLENGRGTCGWRYHGEEEGKG AVVQEIFPFVSELGSKLFKDLMGSVVESMGPSEADVKDFSAFLIPLHSVISEQRGFRSPISMPLNKLAFHCPLYAKEIEQLHVIFIDLLNIMEKCLGKMQ DSSNLKTNGESELNHTGWSQYLFILKELNNIAKLYKGAEEKFWTVLRLRKASLCALIVRYAKQTDDHQWLLQHKDVTDFESRRHLAMMMFPEVKEDYEEL HEMLIDRSQLLAESFEYIMHAESDTLHGGLFMEFKNEEATGPGVLREWFFLVTQAIFDPQNALFVACPSDRRRFYPNSASKVDPMHLDYFTFSGRVIALA LMHKVQVGIVFDRVFFLQLAGMHISLEDIRDADPCLYNSCKQILQRDPEFIDSNALGLTFVREVEELGSIKVVELCPGGKGIVVNSKNREKYVNLLIQHR FVTSISDPVSRFARGFADILSNPGEQKLFFRSLELEDLDWMLYGSESAICVEDWKAHTEYSSLIETDPQISWFWKVCSCTLAFMLYLKSKLLFFFWRYRF FFISYF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Potri.016G059800 [exp]	0	1
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Potri.006G011701 [exp]	1.00	0.9277
AT1G79870			D-isomer specific 2-hydroxyaci...		Potri.013G046150 [exp]	1.41	0.9171
AT3G61800			unknown protein		Potri.014G099300 [exp]	2.23	0.8802
AT4G20325			unknown protein		Potri.006G280600 [exp]	5.74	0.9011
AT3G10120			unknown protein		Potri.006G213100 [exp]	5.74	0.8235
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Potri.010G043800 [exp]	6.48	0.8708
AT3G30380			alpha/beta-Hydrolases superfam...		Potri.004G112300 [exp]	7.07	0.8326
					Potri.011G160250 [exp]	8.48	0.8767
AT4G02720			unknown protein		Potri.002G051500 [exp]	10.95	0.8853
AT3G07870			F-box and associated interacti...		Potri.001G396800 [exp]	12.40	0.8469

Compare expression of checked genes

Potri.016G059800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.