Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	TUBGCP6,Pt-SPC98.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06680 1300 / 0 ATSPC98, SPC98, ATGCP3 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) AT5G17410 128 / 2e-30 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2) AT3G53760 90 / 4e-18 ATGCP4 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) AT3G43610 79 / 1e-14 Spc97 / Spc98 family of spindle pole body (SBP) component (.1) AT1G37010 47 / 2e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G194200 [exp] 1565 / 0 AT5G06680 1201 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Potri.010G180700 [exp] 135 / 1e-32 AT5G17410 994 / 0.0 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2) Potri.014G128400 [exp] 86 / 8e-17 AT3G53760 1076 / 0.0 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) Potri.009G153300 [exp] 62 / 1e-09 AT3G43610 855 / 0.0 Spc97 / Spc98 family of spindle pole body (SBP) component (.1) Potri.016G000100 [exp] 43 / 0.001 AT1G80260 431 / 3e-137 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016246 [exp] 1301 / 0 AT5G06680 1262 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Lus10029296 [exp] 1028 / 0 AT5G06680 998 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Lus10029297 [exp] 220 / 4e-67 AT5G06680 207 / 4e-63 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Lus10026855 [exp] 85 / 2e-16 AT5G17410 805 / 0.0 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2) Lus10029779 [exp] 79 / 7e-15 AT3G53760 1049 / 0.0 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) Lus10042807 [exp] 74 / 5e-13 AT3G53760 1013 / 0.0 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) Lus10020228 [exp] 71 / 5e-13 AT5G17410 382 / 3e-129 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2) Lus10028588 [exp] 50 / 7e-06 AT1G80260 942 / 0.0 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1) Lus10018892 [exp] 49 / 2e-05 AT1G80260 919 / 0.0 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0540 [poplar] [flax] GCP PF04130 [poplar] [flax] GCP_C_terminal Gamma tubulin complex component C-terminal
Representative CDS sequence Show only first row Show all	>Potri.016G059900.1 pacid=42808930 polypeptide=Potri.016G059900.1.p locus=Potri.016G059900 ID=Potri.016G059900.1.v4.1 annot-version=v4.1 ATGGAAGAAGACCAGCAGACAATCTTAGATCTAGTCAAAGAACTAGTCAATCGCTTACTCTCTCAAAACCCACAAAACCCTAAACCTCCAATTTCTAACA CTACCCCTAACTCTCCTGATTTCCAAAATTCTCTTCGCTACGCAATCCGCATTCTCTCCAGCAGGCTAACCCCTTCAATTGCGCCTGATGCCGTCGCAAT CTCTGAATCAATCAAGCGTGGTCTCGCTACTCAAGGTAAATCCTCTCAAGCTCTCACTTTTTCTGAATTATACAACAAATTTGCATCCAAAACGGGGTCG GGAAGTATTAATAACAAATGGGCAGTTCTTTATTTGCTCAAAATCATTTCTGAAGATAAAAAAATTGCACAGAATGCGCCAAATCCATCGCCTTTTTTAT CTAACCTGGGGTTAAATGAGCTTGATTTGAGTAGTGAATCACGGGTTTCGCATAATTTTAAGAGAGGGGAAAAGGATTATGATAAGGGGGTTTTGTTCGT TACTAAAGATCCTGAGAATTTGCGGGAAATCGCTTTTAGAGAGTTTGTTAATTTGATTAAAGAGGAAAACGAGGTGTCCGAAGAGGTTTTAGTGAGAGAT GTGTTATATGCTTGTCAAGGGATTGATGGGAAGTATGTGAAGTTTGATGCAAATGTTGATGGGTATGTTTTGTTGGATTCAATTAAGGTTCCGAGAGGTA CGAGGGTTATGGTTAGGAAGTTGTGTGAGTTGGGATGGTTGTTTAGGAAAGTTAAGGGGTATATTTCAGAAAGTATGGATCGGTTTCCCGCTGAAGATGT GGGAACTGTAGGGCAGGCATTTTGTGCTGCCTTACAGAATGAGCTCTTGGATTATTATAAGTTGTTGGCTGTGCTTGAAGCACAGGCGATGAATCCAATT CCATTGGTTTCAGAGACAGCTAGTTCGGGTAATTATTTGTCATTGAGGAGGTTGTTGGTTTGGTTTGCTGAGCCAATTGTGAAAATGAGGTTGATGGCTG TTTTGGTTGATAAATGCAGAGTTTTGAGGGGTGGGGCGATGGCTGGGGCTATACATTTGCATGCCCAGCATGGAGATCCATTGGTGAATGAGTTCATGAG GAGCTTACTGCGATGTGTATGTTCACCACTTTTTGAAATGGTTAGGAGTTGGGTTTTGGAAGGGCAGTTGGAGGATATTTTTGCTGAGTTTTTTGTTGTG GGTCAGCCAGTGAAAGCTGAGGCACTCTGGAGGGAAGGTTACAGGCTTCATGCGGGGATGCTTCCTTCATTCATTTCACAACCCCTTGCTCAGCGCATTT TAAGGACTGGGAAGTCAATAAATTTTCTTCGTGTCTGTTGTGATGATCGTGGTTGGGCTGATGCCACAACGGAGGCTGCAGCTGCTGCTGGGACCACGAC TAGAAGAGGGAGTCTTGGATATGGTGAAACTGATGCACTTGAAACTCTGGTTGTTGAAGCAGCAAAGAGAATCGATAAGCATCTGTTGGATGTTATGTAC ACGAGGTATAAGTTCAAAGAACATTGCCTTGCAATCAAGCGCTATTTACTTCTGGGACAAGGTGATTTTGTTCAGTATTTAATGGATATTGTTGGGCAGG AACTTTCTGAGCCTGCTAATACAATTAGTTCATTCCAGTTGGCAGGGTTGCTGGAAAGTGCAATTCGTTCATCTAATGCTCAATATGATGATCGTGACAT ATTAGATAGGTTGAGGGTGAAGATGATGCCACATGGAACTGGAGATAGGGGCTGGGATGTATTCTCATTGCAATATGATGCCAGAGTACCATTAGACACA GTGTTCACAGAATCTGTTATGGCAAGATATTTAAGAATTTTTAATTTCCTGTGGAAGCTGAGGCGAGCAGAGCATGCTCTTATTGGTGCGTGGAAGACAA TGAAACCTAATTGTATTACTTCTCATTCTTTCACCAAGCTGCAGCATGCAGTCAAGTTGCAGTTACTTTCAACACTGAGACGATGCCAGGTCCTTTGGAA TCAGATGAATCATTTTGTAACAAACTTGCAATATTATATCATGTTTGAAGTTCTGGAGGTTTCATGGTCTAACTTCTCAAATGAGATGGAAGTAGCGAGG GATCTTGATGATCTACTTGCAGCACATGATAAGTACCTCCATTCGATAGTAGAGAAATCTCTTCTTGGTGAACGATCCCAATCCCTTTACAAGTCACTCT TTGTCTTGTTTGACCTTATATTACGTTTCAGAAGTCATGCTGATCGGTTGTATGAAGGAATTTATGAGTTACAAACAAGAACTAGGGCATCCTCTTTATC CTCTCAAGACAAGAACAGATCACGGAGGCAGACAAAAGACAAATCTTCAGAGCCTGAATCATGGCTTAATGATGGCAGGAAAGCTCTAGAAGAACGTGCT GGTGAATTTCTTCAAAATATGGGGCAGGAACTGGAAACAATATCAAAGGAATATACTGTGTTGCTCGAAGGTTTCTTGTCTCAGTTGCCTATGCAGCAAC ATGTTGATTTGAAATTCCTCTTCTTTCGGCTTGACTTTGCAGAATTTTATAGTCGGTTGCATCCTGGATCATAG
AA sequence Show only first row Show all	>Potri.016G059900.1 pacid=42808930 polypeptide=Potri.016G059900.1.p locus=Potri.016G059900 ID=Potri.016G059900.1.v4.1 annot-version=v4.1 MEEDQQTILDLVKELVNRLLSQNPQNPKPPISNTTPNSPDFQNSLRYAIRILSSRLTPSIAPDAVAISESIKRGLATQGKSSQALTFSELYNKFASKTGS GSINNKWAVLYLLKIISEDKKIAQNAPNPSPFLSNLGLNELDLSSESRVSHNFKRGEKDYDKGVLFVTKDPENLREIAFREFVNLIKEENEVSEEVLVRD VLYACQGIDGKYVKFDANVDGYVLLDSIKVPRGTRVMVRKLCELGWLFRKVKGYISESMDRFPAEDVGTVGQAFCAALQNELLDYYKLLAVLEAQAMNPI PLVSETASSGNYLSLRRLLVWFAEPIVKMRLMAVLVDKCRVLRGGAMAGAIHLHAQHGDPLVNEFMRSLLRCVCSPLFEMVRSWVLEGQLEDIFAEFFVV GQPVKAEALWREGYRLHAGMLPSFISQPLAQRILRTGKSINFLRVCCDDRGWADATTEAAAAAGTTTRRGSLGYGETDALETLVVEAAKRIDKHLLDVMY TRYKFKEHCLAIKRYLLLGQGDFVQYLMDIVGQELSEPANTISSFQLAGLLESAIRSSNAQYDDRDILDRLRVKMMPHGTGDRGWDVFSLQYDARVPLDT VFTESVMARYLRIFNFLWKLRRAEHALIGAWKTMKPNCITSHSFTKLQHAVKLQLLSTLRRCQVLWNQMNHFVTNLQYYIMFEVLEVSWSNFSNEMEVAR DLDDLLAAHDKYLHSIVEKSLLGERSQSLYKSLFVLFDLILRFRSHADRLYEGIYELQTRTRASSLSSQDKNRSRRQTKDKSSEPESWLNDGRKALEERA GEFLQNMGQELETISKEYTVLLEGFLSQLPMQQHVDLKFLFFRLDFAEFYSRLHPGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06680		ATSPC98, SPC98,...	ARABIDOPSIS THALIANA GAMMA TUB...		Potri.016G059900 [exp]	0	1	TUBGCP6,Pt-SPC98.1
AT3G03940			Protein kinase family protein ...		Potri.019G034500 [exp]	9.48	0.5682
AT4G32420			Cyclophilin-like peptidyl-prol...		Potri.018G030300 [exp]	36.33	0.5408
AT3G09880		ATB' BETA, ATB'...	Protein phosphatase 2A regulat...		Potri.016G098400 [exp]	45.69	0.4698	Pt-ATB'.2
AT4G12740			HhH-GPD base excision DNA repa...		Potri.014G198000 [exp]	67.03	0.5147
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Potri.016G123800 [exp]	127.67	0.4730
AT1G51745			Tudor/PWWP/MBT superfamily pro...		Potri.003G045600 [exp]	128.18	0.4650
AT5G25580			unknown protein		Potri.018G035700 [exp]	128.74	0.4796
AT3G61415		ASK21	SKP1-like 21 (.1.2)		Potri.014G085400 [exp]	142.48	0.4526

Compare expression of checked genes

Potri.016G059900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.