Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58050 1131 / 0 unknown protein AT2G41960 785 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G194500 [exp] 2018 / 0 AT3G58050 1083 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021073 [exp] 1212 / 0 AT3G58050 984 / 0.0 unknown protein Lus10016244 [exp] 1026 / 0 AT3G58050 851 / 0.0 unknown protein Lus10029299 [exp] 979 / 0 AT3G58050 820 / 0.0 unknown protein Lus10017239 [exp] 820 / 0 AT3G58050 768 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.016G060200.2 pacid=42809759 polypeptide=Potri.016G060200.2.p locus=Potri.016G060200 ID=Potri.016G060200.2.v4.1 annot-version=v4.1 ATGCCAGGATTAGCACAGAGAAATGAGCAATTTAGAAATGCAACATCATCTGGGGGTTCTTACTCAATTTCTGCTAATGGGTTCTGGTCTAAACATCGTG ATGATGTTAGCTTCAACCAGCTCCAGAAGTTCTGGAGTGAGCTGCCACCACAAGCTCGACAGAAGCTACTGAGGATAGACAAGCAAACCCTGTTTGAGCA AGCTCGTAAGAACATGTACTGTTCTAGATGCAATGGGCTATTGCTCGAAGGTTTTATGCAGATTGTCATGTATGTTAAGTCTTTACAGCAGGAAGGGGGA GGGGGGCACATTCCCTGCAACAGACTGGAAGCCTCGAAAAATCTAAATGATTGTGGATCACATGTACCTAATGGGTGCCAAGATGAAATTCAAGATCCAT CTGTCCATCCTTGGGGTGGTCTCACGACGACACGTGATGGATCATTGACGCTTCTGACATGCTACTTGTTTTCAAAGTCTCTGAAGGGACTCCAAAATGT CTTTGACAGTGCACGAGCAAGGGAGCGGGAAAGGGAATTGCTCTATCCTGATGCCTGTGGTGGGGGAGGTCGGGGTTGGATTAGCCAAGGAATGGCAAGT TATGGTAGAGGACATGGAACAAGAGAGACATGTGCACTGCATACTGCCAGGCTTTCTTGTGATACACTAGTGGATTTCTGGTCAGCACTTGGAGAAGAGA CCCGGCTGTCTCTTTTAAGGATGAAGGAAGAGGATTTCATAGAGAGGCTCATGTGCAGGTTTGACAGCAAGAGATTTTGTAGAGATTGTAGAAGGAATGT TATTCGTGAATTTAAGGAGCTGAAGGAGCTGAAGCGCATGCGACGAGAACCTCGCTGCACTAGTTGGTTTTGTGTTGCAGACACTGCCTTCCAATATGAG GTGTCTGATGATTCTGTCCAAGCTGATTGGCGCCAAACCTTTTCTGATACTGTTGTATCATACCATCACTTTGAATGGGCAGTTGGAACAGGAGAAGGAA AATCTGATATTCTAGAATTTGAAAATGTAGGCATGAATGGAAGTGTTCAAGTCACTGGTCTAGATCTTGGTGGTTTGTCTGCATGTTTTATCACTCTGAG GGCTTGGAAATTTGATGGCCGCTGCACCGAGCTTTCTGTAAAAGCTCATGCCCTAAAGGGTCAACAATGTGTGCACTGCAGGCTCGTAGTAGGTGATGGT TTTGTTACAATTACCAGGGGGGAAAGTATCAGAAGGTTTTTTGAGCATGCTGAAGAGGCCGAGGAAGAAGAGGATGATGATTCTACGGATAAGGACGGAA ATGAACTTGATGGAGAATGCTCCCGTCCCCAAAAGCATGCGAAGAGCCCTGAACTTGCTCGAGAATTTCTTCTAGATGCTGCAACTGTTATTTTTAAGGA ACAGGTTGAGAAGGCTTTCAGAGAAGGAACTGCTCGCCAAAATGCACATAGCATCTTTGTTTGTCTTTCACTAAAACTACTGGAAGATCGGGTTCATGTT GCTTGCAAAGAAATTATTACATTGGAAAAGCAGATGAAGCTTCTTGAAGAAGAGGAAGCAGAAAAACGTGAAGAAGAAGAGCGCAAGGAGAGAAGAAGAA CAAAAGAAAGAGAGAAAAAGATTCGAAGGAAGGAGAGGTTGAAAGGAAAAGAAAGGGATAAAGAAAAGAAGTGTCCTGAATCAAATGATATTACCATATT TCCTGATGTTTCAAAGGATGAAACAACACCAAGTGTTGATGAAGAACTGAACAATGCTATCTGCTGTAGGGATTCAGTAAGTGAAACAGGCGATATTTCT CTGTCCAGGCCTGGATCTCCTGACATTCAAGATCAACAGTTTTCATATGGATGTGAGACTTCTATAATGGAAAATGATTCCTACGATAGTCCTGATGGGG AGGTTGCAAATTTGAAAGAAGGGACCGGCTCTTTTTCGACCGAACAATCAAAATATTCGCGCCGACGATTGAAATTTCGGAAAGAAGTTCAACTTGATTC ATCTTTGAAGTGGCCTGATAGACGTCGATTTGCAGTTATTTCAGAAAGTGGGGCCGTGGTTAATAGATCTGAGTTAAGACACCACAGTGATAATTTTGAG ACTCCTCCTAGGCTTGTTAATGGATTGAATAGGTTGTCAAGGATTAATGGTCCAAAGTCCAATGGTCGAAATTGTGGCCTTAAGTTCAACGAGAACTTCC ATTGTTCCCACAACAGGATGAATGACAGATATGACTTCCATTCTTGCAGCTGTCACCAGAACATTGAATGCAGGGTAAAGGTTGAACCACATGTTTCATC ATTAAGATCGGATCAAGAGAGCAAATCTGTTGGCAAGTCAGAAGCAGTGATGGATATGCCCAAGCAGTTCTATCGTGGTACCAAATATAGTCCAGTAAAT TACATGCGTGAAGGTTGTGGAAGAATCAAAATCAAATCCAGCATGGGAAACAATTCTAAGAAAGTCTGGGAGCCCGTAGAATCACAAAAGAAGTACTCTA GAAGAAGCTCAGACTCTGATGTTACCATGAGCTCATCTACTAAGGTTGAAGCCGTGGTACCAGACAGCAAACTCTTCAAGTCATCTGGTGATATGTGTTC CAGTGAAGTTACAGGAGATTCCATTGAAACTGATCATGATGAGAATAACTTGAAGGAATCAAGGGACCGCAGCCTTGCAACAGTTGAAGACTGCCAGAGT GGATGCCATGTGGAAGCGAATGGTTGCTACTCGACAGAAACTTCTTATGAGGAAGTCAGTTCATGTCCTGCAAAAAACTCTGCATCGTCTGAGACTTCTG ATCCTGGCATTGGAAGCTCTTTGAGTTCTGATAACTGCTCATCTTGCCTTAGTGAGGGAGATAGCAATACAGTTTCTTCAAACAATGGACATCCTGAATC GTCTTCCACTTCAGATTCAGAAGACACCAGTCCACAATCAGAAGGAAGAGACACTTCAACATGCAGTGGAAATGGTTTCTCCAATTCTCATGAACTGGTG CTGGACAACAAACCGAGTACAAATGGAGATGAGGTGTTTGGAAGCAAGAAACCTTTTGAGCTTCAACCAGATGGTCTAAGATTGAACATTTTGGGAAATC CACCTACAACAACTGTCCAAAATCCTGACAATGGAATACCTACTGTTAGTGTGGGTTTGCAACGTCAAGTTGTGTTTCCACCTATGCATAACCATAATTT ACAGTTTCCAGTTTTTCAAGCTCCTTCAACAATGGGCTACTACCATCATCAAACTCCAGTTTCTTGGCCGGCAGCTCCAGCCAATGGATTAATGCCCTTT CCCCAGCCTAACCACTATCTATATGCTGGTTCTCTTGGCTATGGTTTGAATGGAAACTCACGCTTTTGTATGCAATATGGTCCAGTGCAGCATTTGGCAA CTCCGGTGTTCAATCCTGGTCCAGTTCCAGTTTATCAGCCAGTTGCCAAAGAATATGGCTTGAACTCAGAGGTACGAACAGAGACACGTATGATGCAGGA AACTTTAACTGAAGCTAATAAGGAGAGGATGGTTCCAGCTAAATCACGTTCAACAGAAGCACCACCCAGTGGGGAAAGTGGGAAAGTCGATAATTCTGCC AAGTTGCCCAACGGTAATAGTGGATTTTCCTTGTTCCATTTTGGTGGTCCTGTCGCTCTTTCAACAGGATGTAAGTCGGATCCTGTGCCTTCAAAAAATG GAATCATTGGAGATTTTTCTTCGAAGGTCACAACAAATCAGATTGAAAATGATCCTGCTTGCAATAAAAAAGAGATTGCCATGGAAGAATACAACTTGTT TGCAGCAAGTAATGGCATAAGGTTTTCAATCTTCTAA
AA sequence Show only first row Show all	>Potri.016G060200.2 pacid=42809759 polypeptide=Potri.016G060200.2.p locus=Potri.016G060200 ID=Potri.016G060200.2.v4.1 annot-version=v4.1 MPGLAQRNEQFRNATSSGGSYSISANGFWSKHRDDVSFNQLQKFWSELPPQARQKLLRIDKQTLFEQARKNMYCSRCNGLLLEGFMQIVMYVKSLQQEGG GGHIPCNRLEASKNLNDCGSHVPNGCQDEIQDPSVHPWGGLTTTRDGSLTLLTCYLFSKSLKGLQNVFDSARARERERELLYPDACGGGGRGWISQGMAS YGRGHGTRETCALHTARLSCDTLVDFWSALGEETRLSLLRMKEEDFIERLMCRFDSKRFCRDCRRNVIREFKELKELKRMRREPRCTSWFCVADTAFQYE VSDDSVQADWRQTFSDTVVSYHHFEWAVGTGEGKSDILEFENVGMNGSVQVTGLDLGGLSACFITLRAWKFDGRCTELSVKAHALKGQQCVHCRLVVGDG FVTITRGESIRRFFEHAEEAEEEEDDDSTDKDGNELDGECSRPQKHAKSPELAREFLLDAATVIFKEQVEKAFREGTARQNAHSIFVCLSLKLLEDRVHV ACKEIITLEKQMKLLEEEEAEKREEEERKERRRTKEREKKIRRKERLKGKERDKEKKCPESNDITIFPDVSKDETTPSVDEELNNAICCRDSVSETGDIS LSRPGSPDIQDQQFSYGCETSIMENDSYDSPDGEVANLKEGTGSFSTEQSKYSRRRLKFRKEVQLDSSLKWPDRRRFAVISESGAVVNRSELRHHSDNFE TPPRLVNGLNRLSRINGPKSNGRNCGLKFNENFHCSHNRMNDRYDFHSCSCHQNIECRVKVEPHVSSLRSDQESKSVGKSEAVMDMPKQFYRGTKYSPVN YMREGCGRIKIKSSMGNNSKKVWEPVESQKKYSRRSSDSDVTMSSSTKVEAVVPDSKLFKSSGDMCSSEVTGDSIETDHDENNLKESRDRSLATVEDCQS GCHVEANGCYSTETSYEEVSSCPAKNSASSETSDPGIGSSLSSDNCSSCLSEGDSNTVSSNNGHPESSSTSDSEDTSPQSEGRDTSTCSGNGFSNSHELV LDNKPSTNGDEVFGSKKPFELQPDGLRLNILGNPPTTTVQNPDNGIPTVSVGLQRQVVFPPMHNHNLQFPVFQAPSTMGYYHHQTPVSWPAAPANGLMPF PQPNHYLYAGSLGYGLNGNSRFCMQYGPVQHLATPVFNPGPVPVYQPVAKEYGLNSEVRTETRMMQETLTEANKERMVPAKSRSTEAPPSGESGKVDNSA KLPNGNSGFSLFHFGGPVALSTGCKSDPVPSKNGIIGDFSSKVTTNQIENDPACNKKEIAMEEYNLFAASNGIRFSIF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58050			unknown protein		Potri.016G060200 [exp]	0	1
AT3G58050			unknown protein		Potri.006G194500 [exp]	1.73	0.8100
AT4G12780			Chaperone DnaJ-domain superfam...		Potri.002G217200 [exp]	4.00	0.8049
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Potri.005G074700 [exp]	6.32	0.7575	POR.1,TFCFC
AT4G19900			alpha 1,4-glycosyltransferase ...		Potri.015G122200 [exp]	6.48	0.7717
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Potri.003G083800 [exp]	7.48	0.7668
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Potri.005G254000 [exp]	10.24	0.7075
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Potri.010G052600 [exp]	11.61	0.7582
AT1G48760		PAT4, DELTA-ADR	PROTEIN-AFFECTED TRAFFICKING 4...		Potri.015G045600 [exp]	13.96	0.7514
AT1G48760		PAT4, DELTA-ADR	PROTEIN-AFFECTED TRAFFICKING 4...		Potri.012G055000 [exp]	14.96	0.7420
AT5G16300			Vps51/Vps67 family (components...		Potri.008G079700 [exp]	15.19	0.7986

Compare expression of checked genes

Potri.016G060200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.