Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06660 265 / 4e-91 Protein of unknown function DUF106, transmembrane (.1) AT3G12030 256 / 9e-88 Protein of unknown function DUF106, transmembrane (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016235 [exp] 285 / 6e-99 AT5G06660 308 / 3e-108 Protein of unknown function DUF106, transmembrane (.1) Lus10029308 [exp] 284 / 9e-99 AT5G06660 307 / 5e-108 Protein of unknown function DUF106, transmembrane (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0376 [poplar] [flax] Oxa1 PF01956 [poplar] [flax] EMC3_TMCO1 Integral membrane protein EMC3/TMCO1-like
Representative CDS sequence Show only first row Show all	>Potri.016G060300.1 pacid=42809260 polypeptide=Potri.016G060300.1.p locus=Potri.016G060300 ID=Potri.016G060300.1.v4.1 annot-version=v4.1 ATGGCTACCCCGCAGTTCTTCCTCTCCTCATCGAAATACTCAGACAGCTTAACAGTTGTCGGAATCTCAATCTGCACTGCTATTATCTGCGAAACCATTT CATGGATCCTTATTTACCGAACAAACTCTTACAAATCTCTCAAATCCTCCATCGACAAAGCCTCTAAAAAACTCGAAACCATGAAAACCGATACCGCTAA AATCACCACCAAGAAATCCAAAACCAAGAAAATCGACCGTGTCGAATCTTCTTTGAAAGAATCAAGCCGTGACTTGTCCCTTTTCAAATTCAAATCTGGG GCTGTCGTTGCTTTAGTTTTGATCGTTGTTTTTGGGCTTTTGAATTCGCTCTTTGAAGGTAAAGCTGTTGCCAAATTGCCCTTTCAGCCTATCACTCTTG TTATGAAGATGAGTCATAGAGGGTTACCTGGGACTGATTCCACCGACTGCTCCATGGCTTTCTTGTATTTTTTGTGTTCCATTAGTATTCGTACTAATTT GCAGAAGTTTCTTGGGTTTTCTCCGCCTCGTGGTTCTGCTCCTGGTGCTGGTTTTCTCCCCCTTCCTGATACCAAGACCAATTGA
AA sequence Show only first row Show all	>Potri.016G060300.1 pacid=42809260 polypeptide=Potri.016G060300.1.p locus=Potri.016G060300 ID=Potri.016G060300.1.v4.1 annot-version=v4.1 MATPQFFLSSSKYSDSLTVVGISICTAIICETISWILIYRTNSYKSLKSSIDKASKKLETMKTDTAKITTKKSKTKKIDRVESSLKESSRDLSLFKFKSG AVVALVLIVVFGLLNSLFEGKAVAKLPFQPITLVMKMSHRGLPGTDSTDCSMAFLYFLCSISIRTNLQKFLGFSPPRGSAPGAGFLPLPDTKTN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06660			Protein of unknown function DU...		Potri.016G060300 [exp]	0	1
AT3G02420			unknown protein		Potri.017G110600 [exp]	1.00	0.8514
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Potri.008G003200 [exp]	2.00	0.7912	ATFYPP3.2
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Potri.004G118900 [exp]	2.44	0.8129
AT4G21105			cytochrome-c oxidases;electron...		Potri.001G460200 [exp]	2.82	0.8246
AT1G22920		CSN5A, JAB1, AJ...	ARABIDOPSIS JAB1 HOMOLOG 1, CO...		Potri.018G006100 [exp]	3.46	0.7697	AJH1.3
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Potri.001G198100 [exp]	4.24	0.7607	ATTIM23.2
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Potri.001G374000 [exp]	5.47	0.7833	RAB11.4
AT3G54130			Josephin family protein (.1)		Potri.016G110300 [exp]	5.65	0.7643
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.005G253400 [exp]	6.24	0.7467
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.001G270100 [exp]	6.78	0.7249	RAB11.15

Compare expression of checked genes

Potri.016G060300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.