Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12020 1280 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G06670 1219 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G21730 849 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G39050 646 / 0 Kinesin motor family protein (.1) AT2G21380 641 / 0 Kinesin motor family protein (.1) AT3G10180 322 / 1e-92 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G59540 299 / 2e-87 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G43210 277 / 9e-79 TES, ATNACK2 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) AT1G18370 276 / 3e-78 HIK, ATNACK1 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) AT2G21300 272 / 2e-77 ATP binding microtubule motor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G194900 [exp] 1767 / 0 AT3G12020 1278 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G081300 [exp] 988 / 0 AT1G21730 1063 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G122100 [exp] 821 / 0 AT4G39050 1379 / 0.0 Kinesin motor family protein (.1) Potri.004G161100 [exp] 652 / 0 AT4G39050 1411 / 0.0 Kinesin motor family protein (.1) Potri.006G040700 [exp] 337 / 8e-98 AT3G10180 1336 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G013300 [exp] 295 / 1e-85 AT1G59540 885 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G136600 [exp] 290 / 2e-83 AT3G43210 1250 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Potri.002G027600 [exp] 286 / 4e-82 AT2G21300 722 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.012G054400 [exp] 281 / 4e-80 AT1G18370 1466 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016236 [exp] 1390 / 0 AT3G12020 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10029307 [exp] 1384 / 0 AT3G12020 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10025688 [exp] 930 / 0 AT1G21730 1042 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10018145 [exp] 929 / 0 AT1G21730 1033 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017969 [exp] 816 / 0 AT4G39050 1517 / 0.0 Kinesin motor family protein (.1) Lus10041958 [exp] 649 / 0 AT4G39050 1202 / 0.0 Kinesin motor family protein (.1) Lus10017496 [exp] 614 / 0 AT4G39050 1235 / 0.0 Kinesin motor family protein (.1) Lus10028790 [exp] 591 / 0 AT4G39050 1242 / 0.0 Kinesin motor family protein (.1) Lus10012103 [exp] 333 / 1e-96 AT3G10180 1271 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10010441 [exp] 331 / 2e-96 AT3G10180 1214 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Potri.016G060400.1 pacid=42810050 polypeptide=Potri.016G060400.1.p locus=Potri.016G060400 ID=Potri.016G060400.1.v4.1 annot-version=v4.1 ATGGCGACCACACAGGGATCAAAATCAAGAAGATCAAATATAATTAATAATTCAAAGAAAGCAGCAGCGAATTCACCGTCGACATCAACAACATCATCTT CTAAGCAATTTCTAGAGACTTCAATTGACGGTCAAAGCTCGCCTGCATCCTCCTCGGCACTAAGCAAACCACAGTATTTTTACTCTGAAAGTGCTAATTT AGATACTGAAAGATCCAAAGAAAATGTAACTGTCACTGTCCGGTTTCGGCCTCTAAGTCCTAGGGAAATTAGGCAAGGAGAAGAGATTGCGTGGTATGCA GATGGAGAAACTATCGTGCGTAATGAATATAATCCGTCTATCGCGTATGCTTATGATCGGGTATTCGGTCCTACAACTACAACACGCCATGTATATGATG TTGCTGCGCAGCATGTTGTCAATGGTGCTATGGAAGGGATCAATGGCACCATTTTTGCTTATGGAGTGACAAGCAGTGGGAAAACCCATACCATGCATGG GGATCAAAGGTCGCCTGGAATTATACCATTAGCAGTGAAGGATGCTTTTGGTATCATTCAAGAGACTCCAAACCGAGAGTTCCTTCTCCGTGTTTCATAC TTGGAGATCTATAATGAGGTTGTTAATGACTTGTTGAATCCAGCAGGACAAAATTTAAGAATAAGAGAAGATGCTCAGGGAACCTTTGTCGAGGGAATAA AAGAAGAAGTTGTATTATCCCCCGCTCATGCCCTCTCCCTTATAGCAGCTGGAGAAGAGCACAGACATGTTGGGTCTACAAACTTTAATTTACTCAGCAG CAGGAGCCATACAATATTTACACTGATAATAGAGAGTAGCCTGTATGGTGAAAATAGCAAAGGAGAGGCTGTAAATTTGTCCCAGCTGAACCTCATCGAT CTGGCAGGTTCTGAAAGCTCGAAGGCTGAAACTACTGGTTTGAGACGGAAAGAAGGATCCTATATTAATAAAAGTTTGTTGACACTTGGAACAGTTATAT CGAAGTTGACAGATGGGAGAGCCACTCATATTCCATACAGGGACTCAAAATTGACAAGGCTTCTTCAGTCTTCAATAAGTGGTCATGGGCGTGTATCACT CATTTGCACTGTCACTCCCTCATCAAGTAATTTGGAAGAGACACACAATACTTTAAAATTTGCCCACCGTGCAAAGCACATTGAGATTCAAGCAGCACAG AACAAGATTATTGATGAGAAATCGCTTATCAAGAAGTACCAAAATGAGATACGCTGTTTAAAGGAAGAGTTGGAACAATTGAAAAGGGGTATTGTGACAG TTCCTCAATTGAATGACATTGTAGAAGATGACATTGTCCTCCTCAAGCAGAAGCTAGAAGATGGTCAAGTGAAACTGCAATCAAGATTGGAACAAGAAGA GGAAGCTAAAGCAGCTCTATTGAGCAGAATACAGCGGTTGACAAAGTTAATTTTGGTGTCCACAAAAGCTTCACATCCATCAAGGATCTCTCACCGCCCA GGTCCAAGGAGGAGACATTCCTTTGGCGAAGAAGAGCTTGCATACCTACCGTACAAGAGGCGGGACTTGATATTGGATGACGAAAACATTGACCCGTATG TTTCTCTAGAAGGGAATACTGAAAGTGTAGATGAGACACTGAAAGAGAAGAAAACCCGAAAGCATGGGTTGCTGAACTGGTTAAAGCTACGGAAACGAGA TAGTGGGTTGGGAATGAGCACCAGTGACAAATCAAGTGGAGTTAAATCTAATGGTGCACCTTCAACACATCAAGCAGAAAATTGCAATTATCATACAGAA TCCAGACTTTCACATCCTTCACTTACAGAAAGCTCTCCATCAGCTGATCTTCTATCTGAGGTCAGGCAGGATAGAGAGGTTCCTGAGGACAATTTCCTTG GGCAAGAAACTCCTTCGACTAGCATACAAACAAGTGATCAGATTGATCTTCTAAGGGAGCAGCAGAAAATTTTATCTGGAGAGGTGGCACTCCATTCAAG TGCTTTGAAGCGATTATCTGAGGAGGCTTCAAGGAATCCCCAGAAGGAACAGATTCAGTTGGAGATGAAGAAGTTGAGTGATGAAATCAAGGTGAAGAAT GCACAAATAGCTTTGTTGGAAAAGCAAATTGCTGATTCCATCATGGCCTCTCACAACAATATGGATAACTTGGAAGCATCACAAACGATTGCTGAACTGA CAGCGCAGTTGAATGAGAAGTCATTTGAACTTGAGGTTAAAGCAGCAGATAATCGTATAATTCAAGAGCAGCTCAATGAAAAGATCTGTGAATGTGAAGG ATTGCAGGAAACAGTAGTCTCTTTGAAGCAGCAGCTCTCAGATGCACTGGAGTCGAAAAAGCTTAGCCCTCTAGCAAGTTACTCTCAACGAATTTCCGAA CTAAAAAGTTTTCATGCACAGCATCATGGGGACAGGGAAACTGCAGCATCAAAAGATAGAAATGAAGATTTGCTTCTACAAGCACAGACCACTGAGATAG AAGAACTGAAGCAAAAAGCTGCTGCACTAACAGAATCGAAAGAGCAGTTAGAAACTCAGAACCAAAAATTGGCTGAGGAGAGTTCATATGCCAAAGGGCT AGCCTCAGCTGCTGCTGTTGAGCTCAAGGCATTATCAGAAGAAGTTGCCAAGCTCATGAATCATAATGAGAGATTAACTGCTGAGTTGACAGCATTGAAG AACTCGCCCACTCAGCGTAGAACTGGCAGTACTGTTCGCAATGGCCGAAGAGACAATCACATGAAACGCCAAGACCAAGTTGGGGCAGCCTCGGAACTCA AGAGAGAGTTCGCCGTGAGTCGAGAAAGAGAACTTCAATACGAAGCTGCCCTTATCGAGAAGGATCAAAGAGAGACTGAACTTCAAAGGAAAGTCGAGGA ATCCAAACAAAGAGAATCCTATCTGGAAAATGAACTTGCCAACATGTGGGTTCTCGTTGCAAAGCTGAAGAAATCCCAAGGAGCTGAGATGGACCAAAGA GCTGAAATGGATGGCTCCGAGACAACTGACGGTTTTGGAATCTGA
AA sequence Show only first row Show all	>Potri.016G060400.1 pacid=42810050 polypeptide=Potri.016G060400.1.p locus=Potri.016G060400 ID=Potri.016G060400.1.v4.1 annot-version=v4.1 MATTQGSKSRRSNIINNSKKAAANSPSTSTTSSSKQFLETSIDGQSSPASSSALSKPQYFYSESANLDTERSKENVTVTVRFRPLSPREIRQGEEIAWYA DGETIVRNEYNPSIAYAYDRVFGPTTTTRHVYDVAAQHVVNGAMEGINGTIFAYGVTSSGKTHTMHGDQRSPGIIPLAVKDAFGIIQETPNREFLLRVSY LEIYNEVVNDLLNPAGQNLRIREDAQGTFVEGIKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLIIESSLYGENSKGEAVNLSQLNLID LAGSESSKAETTGLRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSISGHGRVSLICTVTPSSSNLEETHNTLKFAHRAKHIEIQAAQ NKIIDEKSLIKKYQNEIRCLKEELEQLKRGIVTVPQLNDIVEDDIVLLKQKLEDGQVKLQSRLEQEEEAKAALLSRIQRLTKLILVSTKASHPSRISHRP GPRRRHSFGEEELAYLPYKRRDLILDDENIDPYVSLEGNTESVDETLKEKKTRKHGLLNWLKLRKRDSGLGMSTSDKSSGVKSNGAPSTHQAENCNYHTE SRLSHPSLTESSPSADLLSEVRQDREVPEDNFLGQETPSTSIQTSDQIDLLREQQKILSGEVALHSSALKRLSEEASRNPQKEQIQLEMKKLSDEIKVKN AQIALLEKQIADSIMASHNNMDNLEASQTIAELTAQLNEKSFELEVKAADNRIIQEQLNEKICECEGLQETVVSLKQQLSDALESKKLSPLASYSQRISE LKSFHAQHHGDRETAASKDRNEDLLLQAQTTEIEELKQKAAALTESKEQLETQNQKLAEESSYAKGLASAAAVELKALSEEVAKLMNHNERLTAELTALK NSPTQRRTGSTVRNGRRDNHMKRQDQVGAASELKREFAVSRERELQYEAALIEKDQRETELQRKVEESKQRESYLENELANMWVLVAKLKKSQGAEMDQR AEMDGSETTDGFGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12020			P-loop containing nucleoside t...		Potri.016G060400 [exp]	0	1
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Potri.001G123700 [exp]	6.08	0.8656	Pt-KUP10.1
AT4G16340		SPK1	SPIKE1, guanyl-nucleotide exch...		Potri.011G024000 [exp]	11.04	0.8526	Pt-SPIKE1.3
AT1G53320	TUB	AtTLP7	tubby like protein 7 (.1)		Potri.011G109300 [exp]	12.00	0.8435
AT2G38650		GAUT7, LGT7	LIKE GLYCOSYL TRANSFERASE 7, g...		Potri.006G114300 [exp]	14.69	0.8336
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Potri.002G172000 [exp]	16.52	0.8377
AT5G10080			Eukaryotic aspartyl protease f...		Potri.005G079900 [exp]	17.32	0.8237
AT1G67040			unknown protein		Potri.004G098300 [exp]	20.78	0.7956
AT2G38840			Guanylate-binding family prote...		Potri.005G217300 [exp]	23.02	0.8433
AT1G68060		ATMAP70-1	microtubule-associated protein...		Potri.010G106100 [exp]	25.03	0.8457
AT4G11450			Protein of unknown function (D...		Potri.003G127500 [exp]	26.87	0.8190

Compare expression of checked genes

Potri.016G060400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.