Plant FIBer expression Database

Potri.016G060500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G12010 805 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G195000
[exp]
1112 / 0 AT3G12010 811 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017227
[exp]
908 / 0 AT3G12010 812 / 0.0 unknown protein
Lus10021085
[exp]
818 / 0 AT3G12010 722 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07035 Mic1 Colon cancer-associated protein Mic1-like
Representative CDS sequence
>Potri.016G060500.1 pacid=42809861 polypeptide=Potri.016G060500.1.p locus=Potri.016G060500 ID=Potri.016G060500.1.v4.1 annot-version=v4.1
ATGTCTGCGAAAGCATCAAGTTCGCAGCTTAGTGTTAGTTCAAGTGGGTCTGGAGGGTTGTCGCATGTTTATATTCAGCACCCTCCTTTACGATGTAATG
TGCCAGGAACAAGGGGTTTATTTTATGATGATGGAAATAAGCTACTGATCTCTCCAACATCTGATCAGGTATTTTCATGGAAAGCTGTACCCTTTGATCC
TCATGTTGCACCTACCTCTGATTCAATAAGTGAAGGGCCTATCCTATCTATACGGTATTCTTTGGATGCAAAGATCATAGCAATCCAGAGATCCAGTCTA
GAGATACAGTTTTTTCATAGGGAAACTGGACAAAACTTTTGTCACAAGTGTAAGCCAGAGTCAGATAGTATACTGGGGTTTTTTTGGACAGATTGTCCGC
TGTGCGATTTTGTACTAGTAAAAACCAGTGGGCTGGATTTGCTCGCCTGTGATGCTGAATCAAAATCACTTAATGTTGTAGAGACAAGGAAATTGAATGT
GAGCTGGTATGTATATACACATGAGAGTCGATTGGTTCTTCTTGCTTCAGGAATGCAATGCAAGACCTTCAATGGATTCCAGCTTTCATCTGCTGGGATT
GTTCGCTTGCCAAAGTTTGAGATGGTAATGGCCAAATCTGAGGCTAACAGCAAGCCTGTCCTAGCAGATGAAGATGTCTATATTGCAACCATCTATGGGA
GGATTTACTGCTTGCAAATTGACAGAATTGCAATGCTACTTCATTCTTATAGATTTTATCGAGACGCTGTTGTGCAGCAGGGTTCCTTGCCAATATATTC
AAACAAAGTTGCTGTTAGTGTGGTTGATAATGTACTTCTTATCCATCAAGTGGGTGCTAAGGTTGTAATACTCTATGACATATTTGCGGATTCTCGATCA
CCCATTTCTGCTCCACTTCCCCTACTGTTTAGGGGCTTCCCCAGGTCTAATACTTCTTCCTCTCGATCTACTGCAAAAGATATTGAAATTCCAGAGGCCA
GCATAAGTGATTCTGAAGCAATTATTTACGGAGATGATTGGACATTTCTTGTTCCTGACCTTATATGTGATGTTTCTAATGAGCTTTTATGGAAGATCCA
TTTAGACTTGGAGGCAATTTCTGCAAGCAGCTCTGAAGCTCCATCAGTGCTTGAGTTCTTGCAACGACGGAAGTTGGAAGCTAGTAAGGCCAAGCAGCTG
TGCTTGGCAATAACACGCAATGTTATTCTTGAAAGGAGACCAGTGTCCACGGTTGCCAAGGCGATAGATATACTGCTTATGTCTTACTCCCTGTCACTAA
AGACAGGCAGTTATCTCAAGGGAATAAAAACAGAGAAAACCTCACATTCTGCTGGGACACAAATTGGTATCCCCCGATCTGGTGCCAGTGCATCTACAGG
AGAAGTTGATGCACATGGAACATCCACCAAACACCAATCTAGTGCCATAGTTGACAATGAATCTCCGAATAGATCTGGAAACTCCTCAACTTCGGACTCT
GAGGACAATACCCAATTCAACTCAATAAAAGCAAACCCGAAAGTGAACAAGGAGAAATTATCAGGTGGTGCTGAGAGTTCTAGCTCTGAAGTTCACCCGT
CATCTTTACAATCTCAGAATCTTGGACCAAGCAACAGTCCATTAAATGCTAGTGTTTCTGAAAGGCAGGAGTCTCAACTTATGTCTCCAGCAATTTCAAC
TGATGAGATGTATAGCTTACTGTTTGCTCCAGTTGAGGAAGAGATGGTGGGGGACCCATCTTACTTGGTTGCCATCATTGTTGAGTTTCTTCGTAGTGCA
AGTTCAGAAAAGATTAAAGTTCAACCAAACATCTATGTGCTGACAATACAACTTCTAGCACGCAATGAGCGATATGCAGAACTCTCATTGTTCATCATAA
ACAAGATTCTTGAACCCTCAAAAGAAGTTGCAATGCAGCTCCTAGAATTAGGTCGTCAAAATTCCCAGATTAGGAAGCTGGGTCTAGACATGCTGAGACA
GCTCTCTTTGCATCATGACTACGTGTTGCTACTAGTTCAAGATGGGTATTATCTTGAAGCCATGCGTTATGCTAGGAAGCACAAGGTTGTGACTGTCCGG
CCATCATTGTTTCTTGAAGCAGCTGTGTCTTCCAATGATTCTCAACTCCTTGCTGCAGTGCTGAGATTCTTTTCAGATTTTACTCCAGGATTTAAAAACA
CTACCGACTGCCATGGATACTGTCGGATTCTCAAGGAGATGAACTCAGATGTAGCTGTTTGA
AA sequence
>Potri.016G060500.1 pacid=42809861 polypeptide=Potri.016G060500.1.p locus=Potri.016G060500 ID=Potri.016G060500.1.v4.1 annot-version=v4.1
MSAKASSSQLSVSSSGSGGLSHVYIQHPPLRCNVPGTRGLFYDDGNKLLISPTSDQVFSWKAVPFDPHVAPTSDSISEGPILSIRYSLDAKIIAIQRSSL
EIQFFHRETGQNFCHKCKPESDSILGFFWTDCPLCDFVLVKTSGLDLLACDAESKSLNVVETRKLNVSWYVYTHESRLVLLASGMQCKTFNGFQLSSAGI
VRLPKFEMVMAKSEANSKPVLADEDVYIATIYGRIYCLQIDRIAMLLHSYRFYRDAVVQQGSLPIYSNKVAVSVVDNVLLIHQVGAKVVILYDIFADSRS
PISAPLPLLFRGFPRSNTSSSRSTAKDIEIPEASISDSEAIIYGDDWTFLVPDLICDVSNELLWKIHLDLEAISASSSEAPSVLEFLQRRKLEASKAKQL
CLAITRNVILERRPVSTVAKAIDILLMSYSLSLKTGSYLKGIKTEKTSHSAGTQIGIPRSGASASTGEVDAHGTSTKHQSSAIVDNESPNRSGNSSTSDS
EDNTQFNSIKANPKVNKEKLSGGAESSSSEVHPSSLQSQNLGPSNSPLNASVSERQESQLMSPAISTDEMYSLLFAPVEEEMVGDPSYLVAIIVEFLRSA
SSEKIKVQPNIYVLTIQLLARNERYAELSLFIINKILEPSKEVAMQLLELGRQNSQIRKLGLDMLRQLSLHHDYVLLLVQDGYYLEAMRYARKHKVVTVR
PSLFLEAAVSSNDSQLLAAVLRFFSDFTPGFKNTTDCHGYCRILKEMNSDVAV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G12010 unknown protein Potri.016G060500
[exp]
0 1
AT1G13170 ORP1D OSBP(oxysterol binding protein... Potri.010G051400
[exp]
6.32 0.7723
AT5G51150 Mitochondrial import inner mem... Potri.015G111200
[exp]
8.30 0.8136
AT1G23030 PUB11 ARM repeat superfamily protein... Potri.010G113900
[exp]
12.24 0.7499
AT4G21890 unknown protein Potri.011G001800
[exp]
16.43 0.7387
AT1G74030 ENO1 enolase 1 (.1) Potri.012G057500
[exp]
40.63 0.6805
AT1G10130 ATECA3, ECA3 ARABIDOPSIS THALIANA ER-TYPE C... Potri.014G014700
[exp]
43.04 0.7398 Pt-ECA3.3
AT2G41740 ATVLN2, VLN2 villin 2 (.1) Potri.016G056200
[exp]
46.54 0.6842 Pt-VLN2.2
AT2G19160 Core-2/I-branching beta-1,6-N-... Potri.006G076600
[exp]
48.00 0.7403
Potri.018G076150
[exp]
52.58 0.6945
AT2G05170 ATVPS11 vacuolar protein sorting 11 (.... Potri.014G165400
[exp]
63.80 0.7009 Pt-ATVPS11.1

Potri.016G060500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.