Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G57860 305 / 7e-108 Translation protein SH3-like family protein (.1) AT1G57660 305 / 7e-108 Translation protein SH3-like family protein (.1) AT1G09690 304 / 7e-108 Translation protein SH3-like family protein (.1) AT1G09590 304 / 7e-108 Translation protein SH3-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G195400 [exp] 329 / 1e-117 AT1G57860 305 / 5e-108 Translation protein SH3-like family protein (.1) Potri.003G159500 [exp] 310 / 6e-110 AT1G09690 305 / 4e-108 Translation protein SH3-like family protein (.1) Potri.001G071100 [exp] 304 / 9e-108 AT1G09690 307 / 7e-109 Translation protein SH3-like family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016241 [exp] 304 / 1e-107 AT1G09590 295 / 4e-104 Translation protein SH3-like family protein (.1) Lus10030882 [exp] 302 / 6e-107 AT1G09690 296 / 2e-104 Translation protein SH3-like family protein (.1) Lus10029302 [exp] 302 / 9e-107 AT1G09690 294 / 1e-103 Translation protein SH3-like family protein (.1) Lus10030607 [exp] 301 / 1e-106 AT1G09590 295 / 4e-104 Translation protein SH3-like family protein (.1) Lus10021079 [exp] 287 / 8e-101 AT1G09590 292 / 6e-103 Translation protein SH3-like family protein (.1) Lus10017232 [exp] 287 / 8e-101 AT1G09590 292 / 6e-103 Translation protein SH3-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0107 [poplar] [flax] KOW PF01157 [poplar] [flax] Ribosomal_L21e Ribosomal protein L21e
Representative CDS sequence Show only first row Show all	>Potri.016G061100.1 pacid=42809826 polypeptide=Potri.016G061100.1.p locus=Potri.016G061100 ID=Potri.016G061100.1.v4.1 annot-version=v4.1 ATGCCGGCTGGTCACGGTCTCCGGTCTCGCACTAGAGATCTCTTCGCTCGTCCCTTTAGAAAGAAGGGTTACATTCCATTGACAACCTACCTCAGAACCT ATAAGATTGGAGACCATGTAGACGTTAAGGTTAACGGCGCCGTCCACAAGGGTATGCCTCACAAGTTTTACCATGGACGTACTGGCAGAGTCTGGAATGT CACCAAACGTGCCATCGGCGTAGAGGTCAACAAGCAGGTGGGTAACAGGATCATCAGGAAGAGGATCCATGTCAGAGTGGAACATTTGCTACCCTCAAGG TGCACTGAGGAATTCCGTCTCAGGAAGAAGAAGAATGATCAACTAAAGGCAGAGGCTAAGGCCAGAGGTGAGGTTATCTGCACAAAGAGGCAGCCAGAGG GTCCTAAACCTGGTTTCATGGTGGAAGGTGCTACATTGGAAACTGTTACTCCCATTCCATATGATGTTGTTAACGATCTCAAGGGAGGTTATTAG
AA sequence Show only first row Show all	>Potri.016G061100.1 pacid=42809826 polypeptide=Potri.016G061100.1.p locus=Potri.016G061100 ID=Potri.016G061100.1.v4.1 annot-version=v4.1 MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKIGDHVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHLLPSR CTEEFRLRKKKNDQLKAEAKARGEVICTKRQPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G57860			Translation protein SH3-like f...		Potri.016G061100 [exp]	0	1
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Potri.001G454000 [exp]	1.41	0.9727
AT3G11940		AML1, ATRPS5A	ARABIDOPSIS MINUTE-LIKE 1, rib...		Potri.006G197700 [exp]	4.00	0.9609	RPS5.2
AT4G09800		RPS18C	S18 ribosomal protein (.1)		Potri.002G051300 [exp]	5.47	0.9558
AT5G09510			Ribosomal protein S19 family p...		Potri.010G076900 [exp]	6.16	0.9338	RPS15.2
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Potri.002G056200 [exp]	6.32	0.9510	Pt-RPS12.2
AT1G57720			Translation elongation factor ...		Potri.019G077000 [exp]	6.63	0.9424
AT2G37270		ATRPS5B	ribosomal protein 5B (.1.2)		Potri.016G063200 [exp]	7.00	0.9530	Pt-RPS5.1
AT5G35530			Ribosomal protein S3 family pr...		Potri.006G222100 [exp]	7.14	0.9598
AT3G44750		HDT1, HDA3, ATH...	HISTONE DEACETYLASE 2A, histon...		Potri.004G188800 [exp]	8.48	0.9146	HDT902,Pt-HD2.1
AT5G02610			Ribosomal L29 family protein ...		Potri.008G048800 [exp]	10.67	0.9541	RPL35.1

Compare expression of checked genes

Potri.016G061100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.