Plant FIBer expression Database

Potri.016G061300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G61172 40 / 1e-05 LCR8 low-molecular-weight cysteine-rich 8 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G195500
[exp]
130 / 1e-40 ND /
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0054 Knottin_1 PF07333 SLR1-BP S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP)
Representative CDS sequence
>Potri.016G061300.1 pacid=42809151 polypeptide=Potri.016G061300.1.p locus=Potri.016G061300 ID=Potri.016G061300.1.v4.1 annot-version=v4.1
ATGAGGATATCCTACGCGCTCTTCTCTCTTCTACTCCTGCTAGTCTCAGCCAAGTTTAGCCAACCCCGGGCAATCATCCACGAGGTCAATGCGGTGAGGA
TTCCAGAGCACACATGCCACAAGCTGCTAGACATGAACAGCTGTGATTCGCAGAAATGTAACCAAGAATGTTCCAAGGAACCTCTAGGAGTGGGAGAGTG
TAGGAATACCTTTTGTTCTTGCACATATTATTGCAAGCAACCTCCAATGTAA
AA sequence
>Potri.016G061300.1 pacid=42809151 polypeptide=Potri.016G061300.1.p locus=Potri.016G061300 ID=Potri.016G061300.1.v4.1 annot-version=v4.1
MRISYALFSLLLLLVSAKFSQPRAIIHEVNAVRIPEHTCHKLLDMNSCDSQKCNQECSKEPLGVGECRNTFCSCTYYCKQPPM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G61172 LCR8 low-molecular-weight cysteine-... Potri.016G061300
[exp]
0 1
AT3G17730 NAC ANAC057 NAC domain containing protein ... Potri.012G038100
[exp]
3.60 0.9801 NAC020
AT1G54860 Glycoprotein membrane precurso... Potri.005G034300
[exp]
5.47 0.9800
AT5G41470 Nuclear transport factor 2 (NT... Potri.001G100500
[exp]
6.70 0.9785
AT3G20570 AtENODL9 early nodulin-like protein 9 (... Potri.011G135400
[exp]
7.74 0.9778
AT5G18970 AWPM-19-like family protein (.... Potri.008G200300
[exp]
8.36 0.9773
AT3G50160 Plant protein of unknown funct... Potri.015G019000
[exp]
8.83 0.9541
AT1G47271 Cystathionine beta-synthase (C... Potri.005G228300
[exp]
9.38 0.9704
AT3G50120 Plant protein of unknown funct... Potri.001G071400
[exp]
10.09 0.9759
AT5G20870 O-Glycosyl hydrolases family 1... Potri.006G216700
[exp]
10.24 0.9631
AT3G20570 AtENODL9 early nodulin-like protein 9 (... Potri.001G419200
[exp]
12.12 0.9722

Potri.016G061300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.