Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53440 577 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 545 / 3e-178 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53420 517 / 7e-168 Leucine-rich repeat transmembrane protein kinase (.1) AT3G14840 515 / 2e-166 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G07650 503 / 9e-162 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G29730 473 / 8e-151 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29740 476 / 1e-150 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29750 463 / 1e-146 RKF1 receptor-like kinase in flowers 1 (.1.2) AT1G29720 460 / 3e-145 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56140 451 / 1e-141 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G012150 [exp] 996 / 0 AT1G53440 574 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G011601 [exp] 988 / 0 AT1G53440 571 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.010G155600 [exp] 985 / 0 AT1G53440 596 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G011200 [exp] 984 / 0 AT1G53440 600 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.010G155150 [exp] 922 / 0 AT1G53440 543 / 1e-176 Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G011400 [exp] 898 / 0 AT1G53440 507 / 2e-163 Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G092700 [exp] 679 / 0 AT1G53440 503 / 4e-161 Leucine-rich repeat transmembrane protein kinase (.1) Potri.006G014232 [exp] 677 / 0 AT1G53440 504 / 5e-161 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G106400 [exp] 585 / 0 AT1G53440 1268 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005550 [exp] 573 / 0 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031374 [exp] 522 / 2e-167 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10041937 [exp] 502 / 2e-162 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10042505 [exp] 506 / 6e-162 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10038153 [exp] 489 / 7e-156 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10015239 [exp] 476 / 6e-152 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10031199 [exp] 462 / 6e-146 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10010951 [exp] 424 / 1e-132 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10005418 [exp] 371 / 3e-114 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10019248 [exp] 230 / 3e-62 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF05498 [poplar] [flax] RALF Rapid ALkalinization Factor (RALF) CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.016G061500.1 pacid=42810676 polypeptide=Potri.016G061500.1.p locus=Potri.016G061500 ID=Potri.016G061500.1.v4.1 annot-version=v4.1 ATGCATATTCCTCCTGCTCTCCCCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTGTCAACATGGTTCTGTATTCAGTGCTGATTCTCGATATGTAAGTT ACGGGGCGCTCCAAAGGAACAATGTTCCTTGTTCTAGACGAGGAGCAACCTATTATGCTTGTGCAGATCAAAATTTCAATTGTAGTGCAGATGGAGGTTT GCCTTGTGATGAAGTGTATGCTCTGAGAGCAGTCATATCAGCGTTGGGGTTGCCAGTGCCACAAATTTCTCGTTCTTACTGCTCGGAGAAGAGCTTCTAT TACAACAGCATTTCCACCACCTGCGACTGCGATAATACCACTACCATTTGTCACATCACCACTATAGCTACGTACGGCATAAGCGTAAGTGGACACGTCC ATGAGTGGCTATCGAAACTCATTTACCTGAAGGAAATTGATCTTTCCCAGAATCAGCTTCGTGGTAGCATTCCAAACCTGGTGAACTTAACTCGGCTAAC GAGTTTAATACTTGGACAAAATCACCTATCTGGGCCAATTCCACCTACCTTGGGGAAGCTGAAAGCTCTGGAAATGCTTGATCTGCAAAAGAACTTCCTG AATGGAGCCATACCTCCATCTTTAGGGAATTTGATGAACCTTGCTACCCTGTCTTTGAGTAATAATATGTTATCAGGTCAAATTCCTAAGGAATTGGGCA CCCTCTTAAATCTCACTTCACTGAGATTGGAAGATAATCAACTTTCTGGTTATCTCCCACCAGAACTTGGAAAATTGAGCAAGCTTGAAGAACTTTATTT GAACTCCAACAGTTTGAGCGGAGGGTTGCCAGGAAGTTTTGCCAATCTTAGATCTCTGGTTTTATTTAGAGTTGCTGGGAACAAGTTGAGTGGTAGGATA CCACCATTCATTGCAAAATGGACCAACCTCACTGACCTGTACCTCATGGGAAATGATTTTGAAGGGGAGCTTCCTCCTGAGATTTTTAATATGCCCGGTC TTCAATCTTTGTGGATAAGTGATCTTAACAACACTGGTTTCTCATTCCCAAAGTTTGCAAATATGACAAACATAAATTACCTGATTATGAGGAATTGCTC ACTTCGCGGTCAAATCCCCAAATACATTGGCGATAATTGGACATCATTAATGTACCTAGACTTGAGCTTTAACAACTTAACTGGTGGGATCCCACGTTCT ATGAAAAAACTATATCTTAATAGATTGGGTCTCGCAAGCAATATGCTTAACGGGCCAATTCCTTCCTGGATTCGTGACATATATAAGGTGGATTTGTCGT ATAATTATAACTTCACAAATCCACAGAATTCAACAAAAAACAAGAACCGACAAAAACTAAACATGACTGAACCAAATAGGGGCTCTATACTTGCGTTGAG CAACCAATGTAAATCAAAACATCATTCCTTGTTTATAAATTGCGGTGGCCCACAAACTCTTGCTGAAGGGAATCAATACGATGAAGATAATGCAACAACA AATTTTTACAGCATTCCAGGAAAGTGGGCTTATTCTTGTTCTGGAGACTTCATCTCAACAACCAGCAATTCAAGCGATTACGTAAAGAAGATGACCTGTG GAGTTTCTATTTCAGAAGAATCATTATATAAAACAGCTCGGCTTTGCCCTGTCTCTCTGATATATTACGGGTTCTGTCTGCATAAAGGAAATTACACGGT GGAACTTCACTTTGCTGAAACTGTTTATACGCAGGATGAAGACTATAGCAGCTTAGGGACTCGTATTTTCGATGTATATATTCAGGGTGAGAGGAAACTG AAGGATTTCAACATAAAACAGAAGGCCAACAGTACAAATGAAGCGTGGATAGAAAAGTTCCCTGTAATTGTGGATGACCATCCATTGGAAATTCATTTTT TCTGGGCTGGCAAAGGATCTCTATATAACCCACCTGCTCTGAATGGACCTCTTGTATCTGCCATTTCTGTAACTCCAAACTTCGATGTTCATGATGGGAA ACTGTCTGCTTCTCAAATAGCCGGGATCACCATAGGTTGTGCATTTCTCCCGTTACTTCTATTTCTTTTCATATGGAAAATGGGATTTCTCGGGAATAGA GAGTTGCGTGAAAAACGAATAGAAGTCCAGAAAAGATCTTTCACCATACAACAGATAATAGATGGTACAAAAAATTTCAGCTCCAAAACGGAGATTGGTA GAGGACGTTTCGGCGTAGTATACAAGGCTGAATTGCCCTATCAGATTAAACTAGCCGTGAAGAAGATTTCTCCCCAATCAAAACAGCAAGGCAAAGATGA AATAAAAAGTGAAATCGGCAACCTGATGTCCTTGAGTCATGAGAATCTTCTTCAATTGTTGGGTGGCTATTCCAATAAAGAACTGCATCTGCTAATTTAT GAATACATGGAATCTGGCTCCCTTCATCAAGCCTTGTTTGAACAAAAAATCACAAACTCTGCAACAGAACTTCCTTGGAGAGCTAGATATGATATTTGCC TAGGAATAGCAAAAGGTTTGAAGTATCTACACGAAGAAGAAGAAAAAAGGATCAAGATCAAGATTGTTCATGGGAATATAAATGCCAAGAACATTTTGCT TGATAACACTCATACCGCAAAGTTATCAGACTTCGGATTGGCAACAATTTACAACGAGGAAGATCCATTTACAGCCATCAAAGCAAGGGGATCGCGAGTA TATATGGCACCTGAGCATGCTTTGGGGAAAGCCATAACAGTTAAAGCAGATGTGTACAGTTATGGGGTTGTAGTACTTGAAATAGTCAGTGGGAGAAGTA ATACTGAATATATTCCAAACCAGGAAGCTGACTTCCTTTTAGATACTGCTGGTCGTTTACACCAAGCTGGAAGGATTCGGGATTTGGTTGATAAGAAGTT AGGATCCAGATTTGATAATAAGCAGGCTCTCACTCTTCTGCATTTGGCCATGGATTGCATCAAACTGTCCCCTACTCTCAGGCCTAGCATGTCCGACGTT GTTACTATCCTTTCAGGTTCCAAAGTGAATGCTCTCTCACCAAATTCTGAAGTTGTGTGA
AA sequence Show only first row Show all	>Potri.016G061500.1 pacid=42810676 polypeptide=Potri.016G061500.1.p locus=Potri.016G061500 ID=Potri.016G061500.1.v4.1 annot-version=v4.1 MHIPPALPFLLLLLLLLLCQHGSVFSADSRYVSYGALQRNNVPCSRRGATYYACADQNFNCSADGGLPCDEVYALRAVISALGLPVPQISRSYCSEKSFY YNSISTTCDCDNTTTICHITTIATYGISVSGHVHEWLSKLIYLKEIDLSQNQLRGSIPNLVNLTRLTSLILGQNHLSGPIPPTLGKLKALEMLDLQKNFL NGAIPPSLGNLMNLATLSLSNNMLSGQIPKELGTLLNLTSLRLEDNQLSGYLPPELGKLSKLEELYLNSNSLSGGLPGSFANLRSLVLFRVAGNKLSGRI PPFIAKWTNLTDLYLMGNDFEGELPPEIFNMPGLQSLWISDLNNTGFSFPKFANMTNINYLIMRNCSLRGQIPKYIGDNWTSLMYLDLSFNNLTGGIPRS MKKLYLNRLGLASNMLNGPIPSWIRDIYKVDLSYNYNFTNPQNSTKNKNRQKLNMTEPNRGSILALSNQCKSKHHSLFINCGGPQTLAEGNQYDEDNATT NFYSIPGKWAYSCSGDFISTTSNSSDYVKKMTCGVSISEESLYKTARLCPVSLIYYGFCLHKGNYTVELHFAETVYTQDEDYSSLGTRIFDVYIQGERKL KDFNIKQKANSTNEAWIEKFPVIVDDHPLEIHFFWAGKGSLYNPPALNGPLVSAISVTPNFDVHDGKLSASQIAGITIGCAFLPLLLFLFIWKMGFLGNR ELREKRIEVQKRSFTIQQIIDGTKNFSSKTEIGRGRFGVVYKAELPYQIKLAVKKISPQSKQQGKDEIKSEIGNLMSLSHENLLQLLGGYSNKELHLLIY EYMESGSLHQALFEQKITNSATELPWRARYDICLGIAKGLKYLHEEEEKRIKIKIVHGNINAKNILLDNTHTAKLSDFGLATIYNEEDPFTAIKARGSRV YMAPEHALGKAITVKADVYSYGVVVLEIVSGRSNTEYIPNQEADFLLDTAGRLHQAGRIRDLVDKKLGSRFDNKQALTLLHLAMDCIKLSPTLRPSMSDV VTILSGSKVNALSPNSEVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53440			Leucine-rich repeat transmembr...		Potri.016G061500 [exp]	0	1
					Potri.012G129400 [exp]	1.41	0.7905
AT5G14750	MYB	WER1, WER, AtMY...	WEREWOLF 1, WEREWOLF, myb doma...		Potri.003G064600 [exp]	2.82	0.7560
AT4G16563			Eukaryotic aspartyl protease f...		Potri.001G158600 [exp]	4.00	0.7702
AT1G29750		RKF1	receptor-like kinase in flower...		Potri.004G063500 [exp]	5.47	0.7688	RKF1.1
AT5G60800			Heavy metal transport/detoxifi...		Potri.004G214700 [exp]	7.07	0.7054
AT3G18670			Ankyrin repeat family protein ...		Potri.011G016300 [exp]	9.74	0.7288
AT3G58480			calmodulin-binding family prot...		Potri.016G063000 [exp]	9.89	0.7117
AT3G17380			TRAF-like family protein (.1)		Potri.014G055400 [exp]	12.64	0.7077
AT3G54070			Ankyrin repeat family protein ...		Potri.011G015801 [exp]	13.41	0.7067
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Potri.002G039000 [exp]	14.28	0.7225	ERF28

Compare expression of checked genes

Potri.016G061500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.