Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58560 926 / 0 DNAse I-like superfamily protein (.1) AT3G58580 919 / 0 DNAse I-like superfamily protein (.1) AT3G18500 137 / 9e-35 DNAse I-like superfamily protein (.1.2.3) AT1G31500 124 / 6e-31 DNAse I-like superfamily protein (.1.2.3.4) AT5G11350 111 / 2e-25 DNAse I-like superfamily protein (.1) AT1G73875 107 / 1e-24 DNAse I-like superfamily protein (.1) AT1G31530 54 / 2e-07 DNAse I-like superfamily protein (.1) AT1G02270 47 / 4e-05 Calcium-binding endonuclease/exonuclease/phosphatase family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G195600 [exp] 1093 / 0 AT3G58560 904 / 0.0 DNAse I-like superfamily protein (.1) Potri.003G106000 [exp] 117 / 2e-28 AT1G31500 457 / 1e-160 DNAse I-like superfamily protein (.1.2.3.4) Potri.012G057100 [exp] 101 / 2e-22 AT1G73875 502 / 2e-176 DNAse I-like superfamily protein (.1) Potri.018G032300 [exp] 101 / 4e-22 AT5G11350 560 / 0.0 DNAse I-like superfamily protein (.1) Potri.014G108200 [exp] 50 / 3e-06 AT5G54130 620 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.015G004200 [exp] 50 / 4e-06 AT5G54130 719 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.012G007600 [exp] 49 / 6e-06 AT5G54130 721 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.002G182500 [exp] 46 / 7e-05 AT5G54130 600 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012293 [exp] 1013 / 0 AT3G58560 949 / 0.0 DNAse I-like superfamily protein (.1) Lus10029338 [exp] 1001 / 0 AT3G58560 945 / 0.0 DNAse I-like superfamily protein (.1) Lus10016206 [exp] 1000 / 0 AT3G58560 944 / 0.0 DNAse I-like superfamily protein (.1) Lus10015981 [exp] 924 / 0 AT3G58580 872 / 0.0 DNAse I-like superfamily protein (.1) Lus10036357 [exp] 126 / 5e-31 AT3G18500 422 / 2e-145 DNAse I-like superfamily protein (.1.2.3) Lus10014775 [exp] 123 / 6e-30 AT3G18500 423 / 7e-146 DNAse I-like superfamily protein (.1.2.3) Lus10026203 [exp] 115 / 8e-28 AT1G31500 458 / 2e-162 DNAse I-like superfamily protein (.1.2.3.4) Lus10032490 [exp] 105 / 1e-23 AT1G73875 446 / 3e-154 DNAse I-like superfamily protein (.1) Lus10013119 [exp] 105 / 3e-23 AT5G11350 536 / 0.0 DNAse I-like superfamily protein (.1) Lus10008086 [exp] 101 / 3e-22 AT5G11350 526 / 9e-178 DNAse I-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [poplar] [flax] DNase_I-like PF03372 [poplar] [flax] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family CL0175 [poplar] [flax] TRASH PF15801 [poplar] [flax] zf-C6H2 zf-MYND-like zinc finger, mRNA-binding
Representative CDS sequence Show only first row Show all	>Potri.016G061700.6 pacid=42809385 polypeptide=Potri.016G061700.6.p locus=Potri.016G061700 ID=Potri.016G061700.6.v4.1 annot-version=v4.1 ATGCTGAGCGTGATACGTGTGCATCTTCCATCGGATATTCCTATTGTTGGTTGTGAGTTAACGCCGTATGTTCTTTTACGGCGACCGGATACGAATGCTA CTACCGATGACGTGCCCGAGTCTGCCCCTCTTGACGGTCATTTCTTGAGATACAAGTGGTATCGGATACAAAGTGATAGAAAAGTTGCTATATGTAGTGT ACATCCATCTGAGCAAGCCACACTGCAGTGTCTAGGCTGTGTTAAGGCCAAATTACCTGTTGCCAAAAGTTACCATTGCTCCCCCAAGTGCTTCTCTGAT GCATGGCAGCATCATCGAGTTCTACATGACCGTGCTGCAAGTGCTATAAATGAAAATGGAAACGAAGAAGAAGAGTTGTTTGGGCGTTTCAATAGCTCAG GATCTGGAGTTATGAATACTAGTTTATCTGGTTCCGCATCTAGTGCTAGCTTGACAAATGGTTCCACACCGTTGTATCCGGCGGCGGTGACACAAAGGAG TGGTGGTGAAACTTGGTTTGAAGTTGGGCGTTCTAAAACATATACACCATCAGCTGATGATATTGGCCACGTTCTCAAGTTTGAATGCGTTGTGGTAGAT GCAGAAACTAAACTCCCTGTAGGACATTCAAACACACTACTAACTTCCCGTGTCATCCCAGCCCCCTCTCCAACTCCTCGTCGTTTGATCTCAGTTAGTG GACTTGATGCAATGGCACCTTTAGATTCAGATGGTCGTATCTCATCATCAGGAACTTTTACTGTGCTCTCATACAACATTTTATCTGATGTGTATGCTAC AAATGACACATACAGTTATTGTCCTTCATGGGCCCTTTCTTGGCCGTATCGCCGACAGAACTTACTACGGGAAATAGTTGGCTATCGTGCAGACATTGTT TGCCTTCAGGAGGTACAAAGTGATCATTATGAGGAATTTTTCGCCCCTGAGCTGGACAAGCATGGCTATCAAGCCCTGTATAAGAGAAAAACCAATGAGG TTTACAATATAAATACTCATACAATTGATGGTTGTGCAACATTTTTTCGCAGAGATAGATTTTCGCATGTTAAAAAATATGAGGTTGAATTTAATAAGGC TGCTCAGTCTTTGACTGATGCATTGGTTCCAAGTGCTCAAAGAAAAACTGCTCTAAATCGATTAGTTAAGGATAATGTTGCATTAATAGTTGTTCTGGAA GCAAAATTTAGTAATCAAGGAGCTGATAATCCTGGAAAGCGGCAGCTACTTTGTGTTGCAAATACGCATATAAATGTCCACCAGGATTTAAAGGATGTCA AGCTTTGGCAGGTCCTTACTCTCTTGAAAGGATTGGAGAAAATAGCTGCTAGTGCTGACATTCCTATGTTGGTGTGTGGAGATTTCAATTCAGTTCCTGG AAGTGCTCCTCATTCTCTTCTAGCCATGGGTAAGGTGGATCAGTTGCATCCGGATTTGGTAGTAGATCCTCTTGGAATCTTACGGCCTCACAGCAAGCTT ACACATCAGCTGCCACTGGTCAGTGCATACTCATCGTTTGCAAGAGTGGGTGTTGGTCTTGGTTCGGATCAGCAGAGGAGGAGAATGGATGCCACAACAA ATGAACCCTTATTTACAAACTGCACTCGAGACTTCATTGGCACCCTAGATTACATATTTTACACAGCGGACTCTTTAACGGTGGAGTCATTGTTGGAACT CCTGGATGAGGAAAGCTTGAGGAAAGACACAGCCCTTCCATCTCCAGAGTGGTCCTCTGATCATATAGCACTTCTCGCTGAATTTCGCTGCAAGCCTAGA CCAAGACGTTAA
AA sequence Show only first row Show all	>Potri.016G061700.6 pacid=42809385 polypeptide=Potri.016G061700.6.p locus=Potri.016G061700 ID=Potri.016G061700.6.v4.1 annot-version=v4.1 MLSVIRVHLPSDIPIVGCELTPYVLLRRPDTNATTDDVPESAPLDGHFLRYKWYRIQSDRKVAICSVHPSEQATLQCLGCVKAKLPVAKSYHCSPKCFSD AWQHHRVLHDRAASAINENGNEEEELFGRFNSSGSGVMNTSLSGSASSASLTNGSTPLYPAAVTQRSGGETWFEVGRSKTYTPSADDIGHVLKFECVVVD AETKLPVGHSNTLLTSRVIPAPSPTPRRLISVSGLDAMAPLDSDGRISSSGTFTVLSYNILSDVYATNDTYSYCPSWALSWPYRRQNLLREIVGYRADIV CLQEVQSDHYEEFFAPELDKHGYQALYKRKTNEVYNINTHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDALVPSAQRKTALNRLVKDNVALIVVLE AKFSNQGADNPGKRQLLCVANTHINVHQDLKDVKLWQVLTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHSLLAMGKVDQLHPDLVVDPLGILRPHSKL THQLPLVSAYSSFARVGVGLGSDQQRRRMDATTNEPLFTNCTRDFIGTLDYIFYTADSLTVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCKPR PRR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58560			DNAse I-like superfamily prote...		Potri.016G061700 [exp]	0	1
AT5G41370		XPB1, ATXPB1	ARABIDOPSIS HOMOLOG OF XERODER...		Potri.001G101300 [exp]	3.74	0.7214	Pt-XPB1.2
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Potri.010G034800 [exp]	14.17	0.7482
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Potri.010G006300 [exp]	17.23	0.7277
AT2G16950		ATTRN1	transportin 1 (.1.2)		Potri.004G177700 [exp]	18.70	0.7076
AT5G19400		SMG7	Telomerase activating protein ...		Potri.001G275400 [exp]	21.16	0.7314
AT1G04635		EMB1687	EMBRYO DEFECTIVE 1687, ribonuc...		Potri.015G001200 [exp]	23.23	0.7291
AT5G14720			Protein kinase superfamily pro...		Potri.001G349300 [exp]	46.03	0.6653
AT3G06190		ATBPM2	BTB-POZ and MATH domain 2 (.1....		Potri.008G200700 [exp]	53.85	0.7023
AT4G24480			Protein kinase superfamily pro...		Potri.005G153100 [exp]	73.70	0.6537
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Potri.010G211100 [exp]	73.97	0.6688

Compare expression of checked genes

Potri.016G061700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.