Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42520 785 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58570 780 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58510 771 / 0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3) AT5G63120 360 / 4e-117 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G55150 344 / 5e-112 DEA(D/H)-box RNA helicase family protein (.1) AT5G14610 345 / 2e-110 DEAD box RNA helicase family protein (.1.2) AT3G01540 340 / 7e-109 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT3G06480 329 / 2e-100 DEAD box RNA helicase family protein (.1) AT2G33730 316 / 2e-98 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G51280 309 / 3e-97 DEAD-box protein abstrakt, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G196000 [exp] 858 / 0 AT3G58570 790 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G217800 [exp] 786 / 0 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G007900 [exp] 776 / 0 AT2G42520 807 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G083000 [exp] 349 / 2e-112 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.003G038300 [exp] 344 / 9e-112 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.012G084600 [exp] 344 / 2e-110 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G071400 [exp] 342 / 1e-107 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.019G130900 [exp] 332 / 1e-106 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.013G158000 [exp] 332 / 2e-106 AT1G55150 322 / 3e-104 DEA(D/H)-box RNA helicase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000849 [exp] 785 / 0 AT2G42520 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015976 [exp] 784 / 0 AT2G42520 849 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016207 [exp] 781 / 0 AT2G42520 850 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015977 [exp] 740 / 0 AT2G42520 738 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10029337 [exp] 683 / 0 AT2G42520 728 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000848 [exp] 653 / 0 AT2G42520 655 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030075 [exp] 595 / 0 AT3G58570 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10001074 [exp] 533 / 0 AT3G58570 533 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015978 [exp] 532 / 0 AT3G58570 535 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015627 [exp] 343 / 3e-111 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.016G061900.1 pacid=42810605 polypeptide=Potri.016G061900.1.p locus=Potri.016G061900 ID=Potri.016G061900.1.v4.1 annot-version=v4.1 ATGAGAACTTCATGGTCAGATTCTGTGGCCAACTCTGCATCCGAGAATGCAGCAGCTTCTGGTTCGTCTGGTCCGCGTCCTACCCGTGCTACTTACATTC CTCCACACCTTCGTAACCAGCCGCCATCTTCTGATTCTCTGGCTCCACCACCTGCTGCTCCCTCACTAGGAAATGATCGTGTAGGTTATAGTGGGCCTGT GGGTGGCTCTCGATGGGGTGGTGGTGGTGGTTCGAGACCGGATCATGGGCGTTCCGGTTATGGTTCTGGTGGTAGAGGAGGTGGTGGTTGGAATAATAGA AGTGGTGGGCGGGACCGCGGGAGGGAGCGTGAGGTGAATCCGTTTGGTGATGATGGTGATGTAGAGCCGGCTTTTGGTGAACAAGAGAATACGGGAATTA ACTTTGACGCGTATGAGGATATTCCGGTGGCGACGAGTGGGCACAATGTGCCACCGCCTGTGAATACATTTGCGGATATAGACTTGGGTGAGGCAGTGAA TCAGAATATTCGGAGGTGTAAGTATGTGAAACCGACTCCAGTTCAGCGTAATGCTATCCCAATATTGCTTGCTGGGAGAGACTTGATGGCTTGTGCTCAG ACGGGTTCAGGGAAGACAGCTGCCTTTTGCTTTCCAATTATTGCTGGAATTATGCGGGAGCAGTATGTACAGAGACCGCATGGAGGGAGGACAATGTACC CTCTGGCTCTTATTCTTTCTCCTACTAGGGAGCTTTCGAGTCAGATACATGATGAAGCCAAAAAGTTTTCCTATCAAACTGGTGTCAAGGTGGTGGTTGT TTATGGAGGCGCACCAATCAACCAACAGCTCCGAGAACTTGAGAGAGGGGTTGATATTCTTGTGGCCACTCCTGGACGGTTAGTGGATTTGCTTGAGAGG GCCAGAGTATCATTGCAGATGATTAGATATTTGGCTCTTGATGAGGCAGACAGGATGCTGGATATGGGGTTTGAGCCTCAGATTAGAAAGATAGTGGAAC AAATGGACATGCCCCCATGCGGCATGAGGCAGACAATGCTGTTCAGTGCCACCTTTCCTAAAGAAATACAGAGACTTGCATCTGATTTTCTTTCAAATTA CATATTTTTGGCTGTTGGAAGGGTTGGATCAAGTACTGATTTAATTGTTCAAAGAGTTGAATATGTTCAAGAGATTGATAAGAGAAGTCATCTCATGGAC CTTCTTCATGCTCAAAGAGAAACTGAAGTTAATAGCAAGCATTCTCTGACATTAGTTTTTGTGGAGACAAAGAAGGGAGCCGACTCACTGGAACATTTGT TACATGTCAATGGATTTCCTGCTACATCAATTCATGGTGATAGAACACAACAGGAAAGAGAAATGGCACTTAGATCATTCAAGAGTGGGAAGACGCCAAT TCTAGTAGCGACAGATGTGGCAGCACGGGGTCTTGATATACCCCATGTGGCTCATGTGGTGAATTTTGATCTTCCAAATGACATTGATGATTATGTTCAC AGGATAGGACGAACAGGACGAGCTGGAAATACAGGGATGGCTACTGCCTTCTTTAACGAAAATAGTATGTCATTAGCAAGACCTTTAGCTGATCTAATGC AAGAAGCAAATCAAGTAGTACCTGCGTGGCTCACTCGTTATGCTTCACGGGTTTTGCATAGTGGTGGCAAGAATCGGCGCTCTGCGGGAGCCCGTTTTGG TGGTCGTGATTTCAGAAGAGAGGGTTCTATTAACAAGGGTACAGAATATTATGGAGGGAACAGTAACAGTGGATATGGGGTTCCTGCTGGTTATGGTGGG GGGTACAATCCAGCCGTGGCCAGTGCTTGGGATTAG
AA sequence Show only first row Show all	>Potri.016G061900.1 pacid=42810605 polypeptide=Potri.016G061900.1.p locus=Potri.016G061900 ID=Potri.016G061900.1.v4.1 annot-version=v4.1 MRTSWSDSVANSASENAAASGSSGPRPTRATYIPPHLRNQPPSSDSLAPPPAAPSLGNDRVGYSGPVGGSRWGGGGGSRPDHGRSGYGSGGRGGGGWNNR SGGRDRGREREVNPFGDDGDVEPAFGEQENTGINFDAYEDIPVATSGHNVPPPVNTFADIDLGEAVNQNIRRCKYVKPTPVQRNAIPILLAGRDLMACAQ TGSGKTAAFCFPIIAGIMREQYVQRPHGGRTMYPLALILSPTRELSSQIHDEAKKFSYQTGVKVVVVYGGAPINQQLRELERGVDILVATPGRLVDLLER ARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPCGMRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVQEIDKRSHLMD LLHAQRETEVNSKHSLTLVFVETKKGADSLEHLLHVNGFPATSIHGDRTQQEREMALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVH RIGRTGRAGNTGMATAFFNENSMSLARPLADLMQEANQVVPAWLTRYASRVLHSGGKNRRSAGARFGGRDFRREGSINKGTEYYGGNSNSGYGVPAGYGG GYNPAVASAWD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42520			P-loop containing nucleoside t...		Potri.016G061900 [exp]	0	1
AT4G15410		PUX5, ATB' GAMM...	serine/threonine protein phosp...		Potri.002G225800 [exp]	7.14	0.7595
AT3G54130			Josephin family protein (.1)		Potri.016G110300 [exp]	7.48	0.7376
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Potri.011G065200 [exp]	8.24	0.7838
AT2G42520			P-loop containing nucleoside t...		Potri.001G007900 [exp]	8.48	0.6813
AT4G17960			unknown protein		Potri.001G143600 [exp]	10.39	0.7611
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Potri.004G118900 [exp]	15.87	0.6876
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Potri.010G199000 [exp]	28.14	0.6991
AT4G31200			SWAP (Suppressor-of-White-APri...		Potri.018G002000 [exp]	28.56	0.7326
AT1G22920		CSN5A, JAB1, AJ...	ARABIDOPSIS JAB1 HOMOLOG 1, CO...		Potri.018G006100 [exp]	30.03	0.6789	AJH1.3
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Potri.002G213600 [exp]	42.14	0.7020

Compare expression of checked genes

Potri.016G061900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.