Plant FIBer expression Database

Potri.016G062100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G58490 575 / 0 AtSPP1 sphingoid phosphate phosphatase 1, Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G196200
[exp]
692 / 0 AT3G58490 591 / 0.0 sphingoid phosphate phosphatase 1, Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000850
[exp]
634 / 0 AT3G58490 592 / 0.0 sphingoid phosphate phosphatase 1, Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2)
Lus10015975
[exp]
630 / 0 AT3G58490 585 / 0.0 sphingoid phosphate phosphatase 1, Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0525 pap2 PF01569 PAP2 PAP2 superfamily
Representative CDS sequence
>Potri.016G062100.1 pacid=42810411 polypeptide=Potri.016G062100.1.p locus=Potri.016G062100 ID=Potri.016G062100.1.v4.1 annot-version=v4.1
ATGGAGAGCATAGCATTATGGCAAGGTTTGACACTTTGTGGGATTGTTTCATGGATTTTTATATCGTCATGTCTTAATGTCACTCAAAAACTTAGAAATT
TGGTCCAGCCTTGGGTTTCTCACCATGTCATCACTGGAACTCCTATCATTCTCCAGATCCAGAAATACCAGCATGGATTTTTGGATGCTTTATTCTCTGG
ATTGTCCTGTGTTGTTTCTGTGCCTTTCTACACTGCTTTTCTTCCTTTGCTCTTCTGGAGTGGACATGGCAAATTGGCTAGGCAAATGACCCTATTAATG
GCGTTCTGTGATTATTCAGGAAACTGCATTAAGGATGTGGTATCAGCTCCTAGACCAAGTTGTCCTCCTGTTAAGAGAATGACTGCCACGAAAGATGAGG
AGGAGAATGCTTTGGAATATGGATTGCCTTCTTCCCACACTCTTAACACAATTTGTTTATCTGGATACCTATTGCACTATGTCCTATCCTATACCCCAAA
TCAAGATGCCTCCTTGAAATTTGCGGGATTTTCCATCTTTTGCTTGATTGTCTGCCTCACTGGTTTGGGAAGAATTTACCTCGGAATGCACAGTGTAATC
GATATCATAGCTGGTCTTGCCATTGGTTTTGCAATCCTTGCATTTTGGCTATCTGTCCATGATTATGTCGACAGTTTCATAGTCTCAGGACAAAATGTTA
TGACCTTCTGGGTGGTCCTAAGTTTTTTATTGCTGTTTGCTTATCCGACTCCAGAACTTCCAACTCCAAGCTTTGAGTTCCATGCAGCCTTCACTGGTGT
TGCATTTGGAATAGTGGCTGGCGTCCAGCAAACCTACCACCAGTTCCACCATGAAGCAGTGCCGCACATATTTACACCGCAACTCACCATCCCAGCTTTT
TTTGGAAGAGTGCTCGTGGGCTTGCCAACAATACTCGTAGTGAAGTACTGCAGCAAGGCCCTGGCTAAATGGATCCTTCCTGTCGTCTCAAACACCTTGG
GCATCCCTATAAAATCAACCAGCTACATCCCCAAGCTAAATGGATCGGTTACTGGGAAGAAATCGGAAAAGAATAAGCCAACAGGTTATGCTATGAAGCT
TTTCTTCTTCTCATCTCAGGACACATTTGACGTGGACACAGGTATTAGATTCCTCCAATACTCGGGCCTCGCTTGGTCCGTGGTGGATCTTGTTCCCTCT
CTCTTCTCGTATCTGAGGTTGTAA
AA sequence
>Potri.016G062100.1 pacid=42810411 polypeptide=Potri.016G062100.1.p locus=Potri.016G062100 ID=Potri.016G062100.1.v4.1 annot-version=v4.1
MESIALWQGLTLCGIVSWIFISSCLNVTQKLRNLVQPWVSHHVITGTPIILQIQKYQHGFLDALFSGLSCVVSVPFYTAFLPLLFWSGHGKLARQMTLLM
AFCDYSGNCIKDVVSAPRPSCPPVKRMTATKDEEENALEYGLPSSHTLNTICLSGYLLHYVLSYTPNQDASLKFAGFSIFCLIVCLTGLGRIYLGMHSVI
DIIAGLAIGFAILAFWLSVHDYVDSFIVSGQNVMTFWVVLSFLLLFAYPTPELPTPSFEFHAAFTGVAFGIVAGVQQTYHQFHHEAVPHIFTPQLTIPAF
FGRVLVGLPTILVVKYCSKALAKWILPVVSNTLGIPIKSTSYIPKLNGSVTGKKSEKNKPTGYAMKLFFFSSQDTFDVDTGIRFLQYSGLAWSVVDLVPS
LFSYLRL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G58490 AtSPP1 sphingoid phosphate phosphatas... Potri.016G062100
[exp]
0 1
AT2G33510 AtCFL1 unknown protein Potri.001G062000
[exp]
1.41 0.7298
AT5G50000 Protein kinase superfamily pro... Potri.012G079000
[exp]
3.00 0.7375
AT4G30210 AR2, ATR2 P450 reductase 2 (.1.2) Potri.018G092100
[exp]
13.63 0.7168 PSC450.1
Potri.007G145550
[exp]
16.97 0.6925
AT5G53560 B5#2, ATB5-A, A... ARABIDOPSIS CYTOCHROME B5 ISOF... Potri.012G024600
[exp]
18.16 0.7086
AT1G58110 bZIP Basic-leucine zipper (bZIP) tr... Potri.003G014800
[exp]
24.39 0.5927
AT2G02960 RING/FYVE/PHD zinc finger supe... Potri.008G086300
[exp]
26.92 0.6386
AT3G19970 alpha/beta-Hydrolases superfam... Potri.005G089000
[exp]
33.94 0.6324
AT4G23630 RTNLB1, BTI1 Reticulan like protein B1, VIR... Potri.001G097700
[exp]
35.11 0.6909
AT5G05610 Alfin AL1 alfin-like 1 (.1.2) Potri.006G100900
[exp]
43.08 0.6152

Potri.016G062100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.