Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-MS2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11980 753 / 0 FAR2, MS2 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) AT3G56700 408 / 2e-136 AtFAR6, FAR6 fatty acid reductase 6 (.1) AT5G22500 392 / 1e-130 FAR1 fatty acid reductase 1 (.1) AT3G44540 384 / 2e-127 FAR4 fatty acid reductase 4 (.1.2) AT3G44550 373 / 3e-123 FAR5 fatty acid reductase 5 (.1) AT4G33790 372 / 1e-122 G7, FAR3, CER4 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) AT3G44560 364 / 1e-119 FAR8 fatty acid reductase 8 (.1) AT5G22420 251 / 5e-77 FAR7 fatty acid reductase 7 (.1) AT3G60060 43 / 0.0002 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G196500 [exp] 1043 / 0 AT3G11980 699 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.016G031600 [exp] 522 / 0 AT3G11980 503 / 9e-174 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.004G185100 [exp] 396 / 3e-132 AT4G33790 594 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.004G185000 [exp] 393 / 7e-131 AT4G33790 588 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.009G144900 [exp] 390 / 5e-130 AT4G33790 618 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.009G145000 [exp] 385 / 5e-128 AT4G33790 578 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.019G075201 [exp] 385 / 1e-127 AT3G44540 515 / 1e-180 fatty acid reductase 4 (.1.2) Potri.009G145100 [exp] 69 / 4e-14 AT3G44540 79 / 1e-18 fatty acid reductase 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029336 [exp] 879 / 0 AT3G11980 753 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10016208 [exp] 873 / 0 AT3G11980 749 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10015974 [exp] 838 / 0 AT3G11980 735 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10000851 [exp] 440 / 5e-148 AT3G11980 459 / 2e-155 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10006264 [exp] 396 / 4e-132 AT4G33790 624 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10020584 [exp] 395 / 7e-132 AT4G33790 627 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10036824 [exp] 330 / 3e-106 AT3G44540 461 / 6e-159 fatty acid reductase 4 (.1.2) Lus10019187 [exp] 317 / 7e-101 AT3G44540 444 / 4e-152 fatty acid reductase 4 (.1.2) Lus10000852 [exp] 211 / 1e-62 AT3G11980 181 / 9e-52 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10036821 [exp] 98 / 2e-23 AT3G44540 143 / 5e-41 fatty acid reductase 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03015 [poplar] [flax] Sterile Male sterility protein CL0063 [poplar] [flax] NADP_Rossmann PF07993 [poplar] [flax] NAD_binding_4 Male sterility protein
Representative CDS sequence Show only first row Show all	>Potri.016G062200.1 pacid=42809266 polypeptide=Potri.016G062200.1.p locus=Potri.016G062200 ID=Potri.016G062200.1.v4.1 annot-version=v4.1 ATGGGGTCCATGTTCCTCAATTCTCCTTTACCCGCATCCAATAAACTGATAAGAGTGTCCAGTAAGTGCGACTGGTGCTTTTTGAGGTGGAGGAAGAGGA ACGTTGTTGTATATTGCCAAGGTGGTGGAGGAAAGGCGATAAGGTCTAGTGGGTTTCCTTCTGTTTTAACAGAAAGATCAGCAGTGGTTAGTGATCAGGA GCATATTGCTTCTGTTAGGGATGCAGGAAGCTTGGTTTTGTCTCCAAATGAAAAAGGGCAACCTGAAATTGCTGTTGAGGACTTTGTGCCTTATGGTGGA CCAACTAGCTCTTCTTTGTTGGAGATGCAAGATGGTATTGGCATTGTCAAATTTCTTAGAGGGAAAGGGCTCTTCATTAGTGGTGCAACTGGCTTTCTAG CCAAAGTTCTTATTGAGAAGATTTTAAGGACCATGCCTGATGTGGGCAAGATATATGTTCTGATTAAGGCAGAAAGCAAGGAAGCTGCAATTACAAGATT GAAAAACGAGATAATAAACGCAGAGCTATTCAAGTGTCTCAGACAAACCCATGGAAAATCCTACCAATCTTTCATGTTGAACAAACTAGTCCCCGTGGTA GGAAATGTCTGCGAATCCAATCTCGGGTTAGAAGAAGATTTAGCTGACAAGATCGCTAATGAAGTTGACATAATCGTCAATTCAGCAGCTAATACAACTT TTGACGAAAGGTATGATGTTGCTATTGATGTCAACACACGAGGAACTTGCCACCTCATGAGCTTTGCGAAGAAGTGCCCGAAACTCAAGCTTTTCTTACA AGTATCAACAGCTTATGTTAATGGACAAAGACAAGGAAGAATTATGGAGAAGCCATTCCTTTTTGGAGACTGTATAGCAAGGGAAAACTTAATCATCTCT GAGAGCACGCCAAGATTTGCACCCGCATTGGATATCGAGCATGAAATGAATCTGGCCTTGGATTCCAAGGAAGCTTTTCAAGAAAATGAAGTGGCTCAAA AGATGAAAGAGTTGGGTTTAGAAAGGGCAAGAAAATATGGGTGGCAAGACACTTACGTATTCACCAAGGCTATGGGGGAAATGGTGGTTGATAACATGAG AGGAGACATACCAGTTGTCATCATTCGACCTAGTGTTATTGAAAGCACTTGCAAAGAGCCATTCCCTGGATGGATGGAAGGGAATAGGATGATGGATCCT ATTGTTTTGTACTACGGGAAAGGGCAGCTCACAGGTTTTTTAGTAGACCCAAATGGGGTCCTTGATGTGGTTCCAGCAGATATGGTGGTTAATGCAACAT TGGCAGCAATGGCTTGGCATGGAATGGAGCAAAAACCGGACATCAATGTCTACCAAATCGCTTCATCTGTTGTAAATCCACTTGTTTTCCAGGACCTGGC TACGTTGCTCCATGAACACTACAATTCCTCTCCATACATGGACTCAAATGGCCGACCAATCCATGTTCCCTCAATGAAGCTCTTCAGCTCCATGGAAGAG TTCTCTGCTCATCTATGGAGATATGTCACTCAGCGAAGTCGGCTAGCGGGAATGGCCACATCGGACAGGAAGTTGTCACAAAAACATGAAAACATATGCA GAAAATCAGTGGAACAAGCCAAGTACCTGGCCAGTATATATGAGCCATACACTTTCTATGGTGGAAGGTTTGATAATAGCAATACTCAGAAACTGATGGA GAGAATGTCAGAAAACGAGAAGGGGATATTCGGATTCGACGTGGGAAGTATTGACTGGAGAGATTATATTACAAATGTTCATATCCCAGGCTTGAGGAGG CATGTCATGAAGGGGAGAGGAATGTGTGGCTGA
AA sequence Show only first row Show all	>Potri.016G062200.1 pacid=42809266 polypeptide=Potri.016G062200.1.p locus=Potri.016G062200 ID=Potri.016G062200.1.v4.1 annot-version=v4.1 MGSMFLNSPLPASNKLIRVSSKCDWCFLRWRKRNVVVYCQGGGGKAIRSSGFPSVLTERSAVVSDQEHIASVRDAGSLVLSPNEKGQPEIAVEDFVPYGG PTSSSLLEMQDGIGIVKFLRGKGLFISGATGFLAKVLIEKILRTMPDVGKIYVLIKAESKEAAITRLKNEIINAELFKCLRQTHGKSYQSFMLNKLVPVV GNVCESNLGLEEDLADKIANEVDIIVNSAANTTFDERYDVAIDVNTRGTCHLMSFAKKCPKLKLFLQVSTAYVNGQRQGRIMEKPFLFGDCIARENLIIS ESTPRFAPALDIEHEMNLALDSKEAFQENEVAQKMKELGLERARKYGWQDTYVFTKAMGEMVVDNMRGDIPVVIIRPSVIESTCKEPFPGWMEGNRMMDP IVLYYGKGQLTGFLVDPNGVLDVVPADMVVNATLAAMAWHGMEQKPDINVYQIASSVVNPLVFQDLATLLHEHYNSSPYMDSNGRPIHVPSMKLFSSMEE FSAHLWRYVTQRSRLAGMATSDRKLSQKHENICRKSVEQAKYLASIYEPYTFYGGRFDNSNTQKLMERMSENEKGIFGFDVGSIDWRDYITNVHIPGLRR HVMKGRGMCG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Potri.016G062200 [exp]	0	1	Pt-MS2.2
AT5G16800			Acyl-CoA N-acyltransferases (N...		Potri.019G050700 [exp]	3.46	0.9195
					Potri.005G011350 [exp]	6.00	0.9320
AT1G80900		MRS2-10, ATMGT1	magnesium transporter 1 (.1)		Potri.007G098000 [exp]	6.70	0.9183
					Potri.009G071750 [exp]	10.53	0.9203
AT1G16290			unknown protein		Potri.008G084100 [exp]	10.58	0.8774
AT5G07820			Plant calmodulin-binding prote...		Potri.012G067100 [exp]	14.69	0.8874
					Potri.006G267450 [exp]	15.16	0.8689
					Potri.007G086250 [exp]	15.87	0.8725
					Potri.001G073350 [exp]	15.87	0.9173
AT2G47710			Adenine nucleotide alpha hydro...		Potri.008G221300 [exp]	17.32	0.8672

Compare expression of checked genes

Potri.016G062200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.