Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06610 474 / 2e-168 Protein of unknown function (DUF620) (.1) AT3G19540 336 / 2e-112 Protein of unknown function (DUF620) (.1) AT1G27690 333 / 3e-112 Protein of unknown function (DUF620) (.1) AT1G49840 323 / 2e-107 Protein of unknown function (DUF620) (.1) AT1G79420 306 / 1e-101 Protein of unknown function (DUF620) (.1) AT5G05840 273 / 2e-88 Protein of unknown function (DUF620) (.1) AT5G66740 229 / 3e-72 Protein of unknown function (DUF620) (.1) AT3G55720 225 / 8e-70 Protein of unknown function (DUF620) (.1) AT1G75160 219 / 3e-68 Protein of unknown function (DUF620) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G196800 [exp] 695 / 0 AT5G06610 457 / 8e-162 Protein of unknown function (DUF620) (.1) Potri.014G019900 [exp] 338 / 1e-113 AT3G19540 583 / 0.0 Protein of unknown function (DUF620) (.1) Potri.008G081700 [exp] 323 / 7e-109 AT1G79420 522 / 0.0 Protein of unknown function (DUF620) (.1) Potri.010G174200 [exp] 323 / 9e-109 AT1G79420 524 / 0.0 Protein of unknown function (DUF620) (.1) Potri.001G297500 [exp] 325 / 4e-108 AT3G19540 665 / 0.0 Protein of unknown function (DUF620) (.1) Potri.009G092400 [exp] 322 / 8e-107 AT3G19540 644 / 0.0 Protein of unknown function (DUF620) (.1) Potri.008G062500 [exp] 291 / 2e-95 AT5G05840 614 / 0.0 Protein of unknown function (DUF620) (.1) Potri.010G195200 [exp] 287 / 5e-94 AT5G05840 600 / 0.0 Protein of unknown function (DUF620) (.1) Potri.014G181500 [exp] 246 / 8e-79 AT1G75160 533 / 0.0 Protein of unknown function (DUF620) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015972 [exp] 495 / 4e-176 AT5G06610 426 / 6e-149 Protein of unknown function (DUF620) (.1) Lus10013534 [exp] 476 / 8e-169 AT5G06610 400 / 7e-139 Protein of unknown function (DUF620) (.1) Lus10024790 [exp] 343 / 2e-115 AT3G19540 630 / 0.0 Protein of unknown function (DUF620) (.1) Lus10013891 [exp] 329 / 4e-110 AT3G19540 674 / 0.0 Protein of unknown function (DUF620) (.1) Lus10004669 [exp] 285 / 8e-93 AT5G05840 558 / 0.0 Protein of unknown function (DUF620) (.1) Lus10040241 [exp] 284 / 9e-93 AT5G05840 551 / 0.0 Protein of unknown function (DUF620) (.1) Lus10018707 [exp] 275 / 2e-88 AT3G19540 566 / 0.0 Protein of unknown function (DUF620) (.1) Lus10001843 [exp] 271 / 2e-87 AT1G79420 452 / 2e-157 Protein of unknown function (DUF620) (.1) Lus10026605 [exp] 263 / 2e-87 AT3G19540 405 / 2e-141 Protein of unknown function (DUF620) (.1) Lus10001755 [exp] 270 / 5e-87 AT1G79420 460 / 2e-160 Protein of unknown function (DUF620) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04788 [poplar] [flax] DUF620 Protein of unknown function (DUF620)
Representative CDS sequence Show only first row Show all	>Potri.016G062400.1 pacid=42810691 polypeptide=Potri.016G062400.1.p locus=Potri.016G062400 ID=Potri.016G062400.1.v4.1 annot-version=v4.1 ATGAGTCGTCTTGCACCATTATCGGAAGAACCCATAAACGAAGATGAAGAGTACAGCACAAACTGTTCAAAGAAGAAAGTTCACTCGTGGAGAAACTGGC TGAAGACTCATTTCCATCTTGTTTTCAACAAAAGATCTGACCTTAAAGTCCTCTTGAGTGTTCTTGGGTGCCCTCTCTTTCCTGTCTCCATCCATTCTAA ATCGCCCGTCAATGAGGTATCCTCCTCAGCTCAATACATTATACAACACTTCACTGCAGCAACCGGTTGCCGAAAACTACAAGGCAAAGTGAAAAATATT TTTGCTACAGGAAAGGTTACAATGGCCATGGTTGATGAGCTTGGTGGCTCAGCTATGGCTGGAGTCACTACAGCTGCACAAAAAGGGTGCTTTGTAATGT GGCAAATGGCCCCTAACAAGTGGCTAATTGAGCTGGTCGTTGATGGCCATAAAGTTGTAGCTGGTAGTGATGGCAATGTGGCCTGGCGCCACACTCCTTG GCTTGGCTCTCATGCTGCGAAAGGTGGAGTTCGGCCTCTACGCCGAGCGCTTCAGGGACTAGATCCTATGGCAATATCAGCTGTATTCTCTCCATCACAA TACATGGGAGAGAAGTGTATCTCAGGCATGGATTGTTTTGTACTGAAATTGTCTGCTGATCAAGCAGACCTTGCTGACCGAAGCGATAGCACAGCAGAGA TGATCAAGCACGTAATATTTGGCTACTTTAGCCAAAAAAATGGCCTCCTGGTGTATCTAGAAGACTCGTACTTAACCAGAATTCAGTCTCCAGGAACCTA CCCCACATACTGGGAAACCACAATGGCAACAAAAATAGAAGACTATCGGGCAGTGGAGGGTGTGATGATAGCACATGGTGGTCAATCAAGTGTAATGATC TCAAGGTTTGGGGATAACTTAAAGGAAGGTCTTTCGACCACACGGATGGAGGAGACATGGACAATCGATGATCTTGCATTTGATGTACCTGGACTCTCCA TGGACTGTTTCATTCCTCCTAAAGAAGTTCAGAAGGATTATCCGGAGGAGAATCTTGATTGGAGATCGCCATTACAATGA
AA sequence Show only first row Show all	>Potri.016G062400.1 pacid=42810691 polypeptide=Potri.016G062400.1.p locus=Potri.016G062400 ID=Potri.016G062400.1.v4.1 annot-version=v4.1 MSRLAPLSEEPINEDEEYSTNCSKKKVHSWRNWLKTHFHLVFNKRSDLKVLLSVLGCPLFPVSIHSKSPVNEVSSSAQYIIQHFTAATGCRKLQGKVKNI FATGKVTMAMVDELGGSAMAGVTTAAQKGCFVMWQMAPNKWLIELVVDGHKVVAGSDGNVAWRHTPWLGSHAAKGGVRPLRRALQGLDPMAISAVFSPSQ YMGEKCISGMDCFVLKLSADQADLADRSDSTAEMIKHVIFGYFSQKNGLLVYLEDSYLTRIQSPGTYPTYWETTMATKIEDYRAVEGVMIAHGGQSSVMI SRFGDNLKEGLSTTRMEETWTIDDLAFDVPGLSMDCFIPPKEVQKDYPEENLDWRSPLQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06610			Protein of unknown function (D...		Potri.016G062400 [exp]	0	1
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Potri.010G067100 [exp]	12.52	0.7901
AT5G48460			Actin binding Calponin homolog...		Potri.002G251600 [exp]	12.72	0.7696
AT4G35100		SIMIP, PIP3A, P...	PLASMA MEMBRANE INTRINSIC PROT...		Potri.009G136600 [exp]	15.49	0.7328
AT1G15260			unknown protein		Potri.003G053600 [exp]	20.85	0.6480
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Potri.001G267300 [exp]	21.56	0.7645
AT5G40740			unknown protein		Potri.001G337600 [exp]	23.81	0.7232
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Potri.008G170800 [exp]	25.69	0.7651
AT2G25355			PNAS-3 related (.1.2)		Potri.015G075400 [exp]	33.31	0.7281
AT4G32280	AUX_IAA	IAA29	indole-3-acetic acid inducible...		Potri.006G255200 [exp]	33.76	0.7359
AT1G79590		ATSYP52, SYP52	syntaxin of plants 52 (.1.2)		Potri.016G030100 [exp]	34.81	0.6632

Compare expression of checked genes

Potri.016G062400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.