Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13570 168 / 6e-52 SCL30A, At-SCL30A SC35-like splicing factor 30A (.1) AT1G55310 162 / 4e-49 ATSCL33, SR33, At-SCL33 SC35-like splicing factor 33 (.1.2.3) AT5G18810 127 / 2e-36 SCL28, At-SCL28 SC35-like splicing factor 28 (.1) AT3G55460 118 / 2e-32 SCL30, At-SCL30 SC35-like splicing factor 30 (.1) AT5G64200 66 / 1e-12 ATSC35, At-SC35 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) AT3G10400 60 / 7e-11 U11/U12-31K U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) AT2G21440 61 / 1e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G08000 57 / 2e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G13690 56 / 1e-09 ATE1 ATPase E1 (.1) AT4G13860 52 / 7e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G197000 [exp] 186 / 1e-59 AT1G55310 187 / 8e-59 SC35-like splicing factor 33 (.1.2.3) Potri.003G218600 [exp] 167 / 8e-52 AT3G13570 177 / 7e-55 SC35-like splicing factor 30A (.1) Potri.001G006400 [exp] 163 / 3e-50 AT3G13570 170 / 3e-52 SC35-like splicing factor 30A (.1) Potri.008G056600 [exp] 132 / 5e-38 AT3G55460 134 / 6e-38 SC35-like splicing factor 30 (.1) Potri.010G203200 [exp] 131 / 2e-37 AT3G55460 144 / 1e-41 SC35-like splicing factor 30 (.1) Potri.010G026100 [exp] 130 / 2e-37 AT5G18810 172 / 2e-53 SC35-like splicing factor 28 (.1) Potri.008G196700 [exp] 129 / 7e-37 AT5G18810 168 / 8e-52 SC35-like splicing factor 28 (.1) Potri.003G023800 [exp] 65 / 1e-12 AT5G64200 207 / 4e-66 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Potri.002G095800 [exp] 64 / 3e-12 AT5G64200 204 / 5e-65 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002699 [exp] 115 / 3e-31 AT3G55460 138 / 3e-39 SC35-like splicing factor 30 (.1) Lus10029328 [exp] 111 / 2e-30 AT1G55310 160 / 2e-49 SC35-like splicing factor 33 (.1.2.3) Lus10000953 [exp] 117 / 3e-30 AT2G39670 588 / 0.0 Radical SAM superfamily protein (.1.2) Lus10012932 [exp] 99 / 3e-25 AT3G13570 174 / 1e-53 SC35-like splicing factor 30A (.1) Lus10016215 [exp] 84 / 4e-20 AT1G55310 119 / 6e-34 SC35-like splicing factor 33 (.1.2.3) Lus10017299 [exp] 78 / 3e-18 AT1G55310 120 / 9e-35 SC35-like splicing factor 33 (.1.2.3) Lus10013539 [exp] 78 / 3e-18 AT1G55310 119 / 5e-34 SC35-like splicing factor 33 (.1.2.3) Lus10023802 [exp] 65 / 2e-12 AT5G64200 217 / 1e-68 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Lus10003957 [exp] 64 / 2e-12 AT5G64200 217 / 9e-70 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Lus10014565 [exp] 60 / 4e-11 AT1G13690 277 / 9e-97 ATPase E1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.016G062500.1 pacid=42809956 polypeptide=Potri.016G062500.1.p locus=Potri.016G062500 ID=Potri.016G062500.1.v4.1 annot-version=v4.1 ATGAGGGGAAGAAGCTACAGTTACAGTCCCTCACCCCCAAGGGGTTATGGGAGGAAACATAGGAGTCCTAGCCCTAGGGGTCGGCATGGAGGTCGTGGTA GGGATCTTCCTACTAGTCTTCTGGTTCGCAATCTTCGTCTTGATTGCAGGCCTGAAGATTTGCGTGGACCGTTTGGTCGGTTTGGCCCTCTGAAGGACGT TTACTTGCCCCGAGATTATTATACCGGGGAACCTCGTGGCTTTGGATTTGTCCAATATTTAGAACCAGCTGATGCTGCAGATGCTAAGCATCATATGGAT GGTGAAATTCTTTTTGGACGGGAACTGACAGTTGTTTTTGCTGAGGAAAATAGGAAGAAGCCTGCAGAAATGAGGGCAAGAGATCGTGTGAGTGGTGGCC GGTACAATGATCCCAGGCGCTCTCCATCACCACGCTATGGACGGAGTTATTCTCGTAGTCCTGTGTATTATTCTCCTTCCTCCAGGCGAAGACATTATTC AAGACCTGTTTCTCCTAGAGATAGAAGGTATAGAGACCAATCCTACTCAAGGTCTCCTTATGGTTCAAGGAGCTATAGCAGGAGCCCAATTAGGAACCGT AGCCGGAGCCTGGAGTACTCTAGGTGA
AA sequence Show only first row Show all	>Potri.016G062500.1 pacid=42809956 polypeptide=Potri.016G062500.1.p locus=Potri.016G062500 ID=Potri.016G062500.1.v4.1 annot-version=v4.1 MRGRSYSYSPSPPRGYGRKHRSPSPRGRHGGRGRDLPTSLLVRNLRLDCRPEDLRGPFGRFGPLKDVYLPRDYYTGEPRGFGFVQYLEPADAADAKHHMD GEILFGRELTVVFAEENRKKPAEMRARDRVSGGRYNDPRRSPSPRYGRSYSRSPVYYSPSSRRRHYSRPVSPRDRRYRDQSYSRSPYGSRSYSRSPIRNR SRSLEYSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13570		SCL30A, At-SCL3...	SC35-like splicing factor 30A ...		Potri.016G062500 [exp]	0	1
AT1G07400			HSP20-like chaperones superfam...		Potri.018G140600 [exp]	1.00	0.8907	Pt-HSP17.2
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Potri.003G202500 [exp]	5.00	0.8217
AT2G46080			unknown protein		Potri.014G088600 [exp]	5.09	0.8523
AT1G67360			Rubber elongation factor prote...		Potri.001G055300 [exp]	5.29	0.7966
AT1G55310		ATSCL33, SR33, ...	SC35-like splicing factor 33 (...		Potri.006G197000 [exp]	5.47	0.8100
AT2G20280	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.006G132800 [exp]	5.65	0.7299
AT3G10480	NAC	ANAC050	NAC domain containing protein ...		Potri.013G079700 [exp]	8.06	0.7629	NAC152
AT4G29520			unknown protein		Potri.018G067300 [exp]	9.59	0.8272
AT5G47120		ATBI-1, ATBI1	ARABIDOPSIS BAX INHIBITOR 1, B...		Potri.001G151800 [exp]	14.00	0.7623	ATBI.1
AT4G39140			RING/U-box superfamily protein...		Potri.006G063100 [exp]	14.69	0.7385

Compare expression of checked genes

Potri.016G062500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.