Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11964 2211 / 0 RNA binding;RNA binding (.1) AT3G51110 61 / 5e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23700 54 / 1e-06 Nucleic acid-binding proteins superfamily (.1) AT5G41770 47 / 0.0001 crooked neck protein, putative / cell cycle protein, putative (.1) AT3G13210 47 / 0.0002 crooked neck protein, putative / cell cycle protein, putative (.1) AT5G45990 46 / 0.0003 crooked neck protein, putative / cell cycle protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G148500 [exp] 64 / 7e-10 AT3G23700 439 / 2e-153 Nucleic acid-binding proteins superfamily (.1) Potri.013G135300 [exp] 47 / 0.0001 AT4G03430 1470 / 0.0 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1) Potri.001G094400 [exp] 46 / 0.0003 AT5G41770 1117 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016216 [exp] 2369 / 0 AT3G11964 2151 / 0.0 RNA binding;RNA binding (.1) Lus10029327 [exp] 2355 / 0 AT3G11964 2127 / 0.0 RNA binding;RNA binding (.1) Lus10034294 [exp] 49 / 4e-05 AT5G41770 1153 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Lus10041477 [exp] 49 / 6e-05 AT5G41770 1161 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Lus10022587 [exp] 45 / 0.0007 AT3G23700 374 / 3e-128 Nucleic acid-binding proteins superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [poplar] [flax] OB PF00575 [poplar] [flax] S1 S1 RNA binding domain CL0020 [poplar] [flax] TPR PF05843 [poplar] [flax] Suf Suppressor of forked protein (Suf)
Representative CDS sequence Show only first row Show all	>Potri.016G062600.1 pacid=42810231 polypeptide=Potri.016G062600.1.p locus=Potri.016G062600 ID=Potri.016G062600.1.v4.1 annot-version=v4.1 ATGACAGCTCCTTCGAAGAAAAAACAACAGAATCCAAAACAAAACGACGGTCCAAAATTCAACAAAGCATCACAGAAGCAGTTCAAAGCGAAGCAGACGA AAAATAAGAAGAGTTTTTCAAACGACGCCGTCGTAAAAGATGCGTCTATTGCTTTGCAACTTGAAGATGACGTCCCTGACTTCCCTCGAGGTGGTAAGAG TTCGTTGAGTCAGAGAGAAAGAGAGGAAATTAGAGCACAAGTTGATGAAGAATTCGAGGGGGAGGAGAGGCGTTTGAATAAGAAGAATAAGAAGGGGAAG AAGTTTCAAAACAAGAGTAGTCAATTATCTGGAGATGATTTAGGTTCCCTTTTTGGCGATGTTTTAACCGGAAAACTGCCTCGTTTTGCTAATAAGATCA CAATGAAGAACATTTCTCCTGGAATGAAGCTTTGGGGAGTTGTTACTGAAGTAAACGAGAAGGACCTTGTAATTAGTCTTCCTGGAGGATTGCGTGGATT AGTACGTTCTGTGGATGCAGTTGATCCTGTTTTGACTGATCAAATCGAGGATGGTGAAGGTAGCCTTCCAAGAGTATTCCATGTAGGGCAGCTGGTTTCA TGCATTGTGTTGAAGTTGGATGATGATAAGAACGATAACAAGAAAAGAAAGATTTGGCTTTCTCTGCGCCTTTCGTTATTGCACAATGGCTTCTCATTAG ATGCTGTTAAGGAAGGGATGGTCCTCACCGCATATGTCAAAAGCATTGAAGATCATGGTTTCATCCTGCATTTTGGTTTGTCATCGTTTATGGGATTTTT GCCAAAGAACAGCCAAGCTGAGAGCAGGGATTCTGAAGTGAAAACTGGGCAATTTTTACAGGGGATTGTTACAAAGATTGATAAAACTCGGAAAGTTGTT TATCTGAGCTCTGACCCAGATACAGTGTCTAAATGTGTGACTAAGGATCTTAAGGGCATTTCAATTGATCTTCTCATTCCAGGCATGATGGTTGATGCCC GTGTACAGTCGACCCTTGAAAATGGGATAATGTTATCATTCCTTACATACTTTACTGGAACTGTTGATATGTTTCATTTACAAAATACTTTCCCTACTTC AAATTGGAAGGACGATTATGCCAAGAATAAAAAGGTCAGTGCTCGTATATTATTTATCGATCCCTCAACTAGAGCTGTTGGTTTGACTCTCAATCAACAT CTTGTTCACAACAATTCACCGCCATCTAGTGTTAAAGTTGGAGATATTTATGACATTGCAAAAGTAGTCAGGGTAGATAAAGGCATGGGACTTCTACTTG AAATCCCATCTACTCCGCTGCCAACTCCAGCATTTGTTAATGTATCTGATGTGGCTGAAGATGAGGTACGGAAGCTTGAAAAGAAGTTTAAGGAAGGAAG TAATGTTCGTGTTCGAATCCTTGGGTATAGGCATTTGGAAGGGCTTGCCACGGGGATTTTGAAGGCTAGTGCTTTTGAAGGATCTGTATTCACCCACTCT GATGTCAAGCCAGGCATGGCAACAAGGGCTAAAATCATAGCTGTTGACAGCTTTGGGGCTATTGTGCAATTTCCTGGTGGAGTGAAGGCACTTTGTCCGC TTCGACATATGTCTGAATTTGAAATTGTGAAACCTCGGAAAAAATTCAAGGTTGGAGCTGAGCTGTTTTTCCGTGTGCTGGGTTGCAAGTCCAAGAGAAT AACTGTGACACACAAGAAAACTCTTGTTAAATCTAAACTTCCAATTCTTAGTTCATATTCTGATGCAACTGATGGACTAATAACACATGGTTGGATAACA AAGATTGAAAAGCCTGGATGCTTTGTCCATTTTTACAATGGAGTCCAGGGATTTGCCCCCAGATCTGAGCTTGGATTGGAACCAGGAAGTGATGCAATTT CAACTTATCAAGTTGGGCAGGTTGTCAAATGCAGAGTAATAAGTTCTATTGCTGCTTCACGCAGGATCAATCTTAGTTTCATAATGAAGCCTCTAAGGTT TTCTGAAGAAGATGGCATCAAGATGGGTAGTGTGGTTACTGGAGTTATTGATAAAGTTACCGCCTCTTCAGTAATAGTTTATGTTAATGCAAAAGACTAC TTGAAGGGGACAATTGCTACCGAGCATTTGTCAGATCACCATGAACATGCTGCCTTGATGAAGTCAGTCTTGAAGCCTGGATATGAGTTTGATCAACTAC TGGTCCTAGATATTGAGAGCAACAATTTGGCTCTCTCTGCAAAATATTCTCTTATCAAGTCTGCTTCTCAGCTTCCTTCGGATCTAAGCCAGATTCGTCC TCAGTCAATAGTCCATGGGTACATCTGTAACATGATTGAAACTGGCTGCTTTGTTCGCTTTCTTGGGAATTTGACGGCTTTCTCCCCTAGAAGCAAGGCA ATGGATGACCAAAGATCTCAGCTTTCAGAAGCCTTTTACATTGGACAATCTGTTCGTAGTAATATACTCGATGTTAACAATGAAACAAGCAGAATAACAG TGTCTTTGAAGCAGTCATGCTGCTCATCTACAGATGCATGCTTTCTTCAAGAATACTTTCTCTCAGAGAACAAGATTGCTGATCTGCAATCTTCAGATTC TAAAGGTCGTGACTTGAAGTGGGTTGAAGGATTTCATATTGGCAGCACTATTGAGGGAAAAATTCAGGAGTCAAAGGAATTCGGTGTTGTTGTCAGTTTT GAGAAACATAATGATGTTTTTGGTTTTGTTTCTCATCACCAGTTAGGTGGAGCAATGGTGAAAGCAGGTGCAAATGTTCGAGCTGCTGTTCTTGATGTTG CCAAGACAGAACGCCTTGTTGATTTATCTCTAAAGCTTGAGTTTTTGGATAAATCAAGAGACAAGAGTTCTAACAGCCTAACTCACAAGAAGAAACGAAA AGGAGAGATGTCTAAGGACTTGGAGGTGCACCAAACAGTAAATGCAGTTGTTGAGATTGTGAAAGAAAATTACCTGGTTCTGTCAATTCCTGAGCATAAC TATGCCATAGGTTATGCGTCGGTATCAGACTATAATACACAAAAGATATCTCAGAAACAATTTCTGAATGGACAAAGCGTTAGTGCCACAGTTATGGCTC TTCCAACCCCTTCTACTGCCGGGAGGTTGCTTTTGCTTCTGAAATCTATTAGTGAGGTGACTGAGACATCCAGTTCAAAGAAGGCCAAGAGAAAGTCTAG CTGTAATGTTGGATCCCTGGTTCAGGCAGAGATTACTGAAATCAAGCCTCTTGAAATGAGATTGAAATTCGGTATTGGTTTTCGTGGAAGGATTCATATA ACAGAGGTCAACGATACTTGTCTTTTGGAGAATCCATTTAGTAACTTCAGAGTTGGCCAAACAGTGTCTGCGAGGATTATTGCTAAGGCTGGTCAATCTG ATAATAAAAAAAGTCAGCTGTGGGATTTGTCTATCAAACCAAAAATGCTTGAAGATTCATGCATGATAGAGGATAAACTTGTGCCCAAGGAATATGAGTT TTCATCTGGGCAACACGTCTCTGGTTATGTATATAAAGTGGACGGTGAATGGGCCTGGTTAACAATATCTCGACATTTGAAGGCAAAGCTTTTTGTTCTC GACAGTGCTTGTGAACCTAGTGAACTTCAAGAATTCCAAAAAAGATTCTATGTTGGGAAGGCCGTGACTGGTCATGTTTTGAACTATAACAAGGAGAAAG CATCACTACGGTTGGCACTCCATCCATTTGCTGCCTCTCAAACTCTTGTTGATGGGGGAGCTCCAATTATGGATGACCTACAGGGTAATGCTCCCTGGGA CAATGTTACTGCTCATATTCGCGAAGGAGATATTGTAGGTGGTAGAATTTCCAAGATACTGCCAGGTGTTGGTGGATTGCTGGTGCAACTTGGTCCTCAT ATACATGGCAGGGTTCATTTTACCGAACTTCAAGACTCGTGGGTTCCTGATCCATTGTCTGCATACAAAGAAGGTCAATTTGTCAAATCCAAGGTCCTAG AGATAAGCCATCCAGTCAAGGGTACCATTCACATCGATCTGTCATTACGTTTATCTTTGAATGGCATGCTTGGTCAAAATTCAGCAGAGTTCTCGAATAA TCAGGATGCTCCCAGCAAACATGTGGATAAGATTGAGGATCTACAACCTGACATGGTTGTGCAGGGTTATGTTAAGAATGTTTCATCAAAAGGATGTTTC ATTTCACTTTCAAGGAAACTTGATGCAAAAATTCTCCTCTCAAATCTGTCTGAGGGATATATTGATGATCCTGAAAAAGAATTCCCAATCGGGAAACTTT TAACTGGCCGGGTACTATCTGTGGAGCATCTATCAAAGCGAATTGAAGTTACCTTGAAGAAATCGGGCGTAAGCAACGCGTCAAAATCTGAAAACAGTGA TCTGAGTCGCCTACATGTTGGGGAAATAATTTCTGGCAGGATTAAACGGGTGGAATCATATGGGTTGTTTATCGCACTTGACCACACAAATTTGGTTGGA TTGTGTCATGTGTCACAGCTTTTGGATCATATTGGTAACATTGAATCGAAATATAAAGCTGGGGAGAAGGTTACAGCAAAGATTTTGAAGGTGGATGAGG AAAGGCGCCGAATCTCTCTTGGAATGAAGAACTTAGATGTTCGGGATGATATGAACTCTTCAAAAGAAGAATCTGATGAAGAAAAGAGTGAAAATGAATC TATGGATGACAGCAATGCTCAAATAAAAATAATTCCGGAGAGCAGTTTGCTTGGTATCCATAACATTGATGTTGAATGCCAGAATGAACGTTCAATTCTT GCCCAAGCAGAATCCAGGGCCTCAATTCCTCCGCTTGAGGTCGCACTTGATGACACGGAGCACTCTCATCCAGATGATGTCCTTCTTCAAAACCAAGGGC ATATTGACGAGGCAGACACTATGGTTAAGAAGAATAAACAAGAAAAGAAGAAACCAAAGAAATTGAGTGAGCAAGAAATTAGTGCTGCTGAAGAGAGACG GCTAGAGGAAGATGAACCAAGGACTGCTGATGAATTTGAGATGGTGATTCGAAGCTCTCCCAATAACAGTTTTCTTTGGATAGCATACATGCGCTTCATG CTCTCTTTGGCTGATATCGAGAAGGCTCGCTCTATTGCTGAAAGGGCTTTGAATACAATTAATATTCGAGAAGAGGATGAGAAGCTAAACATTTGGGTGG CGTACTTCAACTTGGAAAATGAATATGGAAATCCTCCTGAGGATGCTGTTAAGAAAGTTTTTCAGAGAGCATTGCAATATTGTGATCCAAAGAAGGTCCA TCTGGCACTCTTGAAAATGTATAAGAAGACTAATCAGAATAAATTAGCTGAGGAGCTTCTTGACAAAATGATCAAGAAGTTCAAGCATTCATGCAAGTTT TGGTTGAAACGGGTAAAGTGGCTTCTCAAGCAAAAGCAAGATGGGGTTCAGTCTGTTGTGCAACGTGCTCTTTTATGCCTTCCTCGCCATAAGCACATCA AGTTCATCTCGCAGACAGCTATCCGTGAGTTCAAATGCGGGGTCGCTGATAGAGGGAGAACCCTGTTTGAAGAAATTTTGAGAGAATACCCAAAGAGAAC AGACTTATGGAGTGTTTATCTTGATCAGGAAATTAAACTTGGAGACGCGGATGTGATTCGTTCACTTTTTGAGAGGGCAATTAGTCTGAGTCTTCCACCT AAAAAGATGAAATTTTTATTCAAGAAATATCTGGAGTATGAGAAGTCTTATGGTGATGAAAAACAGATCGAGTCTGTGAAACAGAAGGCCATGGAATATG TTCAGAATACCCTGGCCTGA
AA sequence Show only first row Show all	>Potri.016G062600.1 pacid=42810231 polypeptide=Potri.016G062600.1.p locus=Potri.016G062600 ID=Potri.016G062600.1.v4.1 annot-version=v4.1 MTAPSKKKQQNPKQNDGPKFNKASQKQFKAKQTKNKKSFSNDAVVKDASIALQLEDDVPDFPRGGKSSLSQREREEIRAQVDEEFEGEERRLNKKNKKGK KFQNKSSQLSGDDLGSLFGDVLTGKLPRFANKITMKNISPGMKLWGVVTEVNEKDLVISLPGGLRGLVRSVDAVDPVLTDQIEDGEGSLPRVFHVGQLVS CIVLKLDDDKNDNKKRKIWLSLRLSLLHNGFSLDAVKEGMVLTAYVKSIEDHGFILHFGLSSFMGFLPKNSQAESRDSEVKTGQFLQGIVTKIDKTRKVV YLSSDPDTVSKCVTKDLKGISIDLLIPGMMVDARVQSTLENGIMLSFLTYFTGTVDMFHLQNTFPTSNWKDDYAKNKKVSARILFIDPSTRAVGLTLNQH LVHNNSPPSSVKVGDIYDIAKVVRVDKGMGLLLEIPSTPLPTPAFVNVSDVAEDEVRKLEKKFKEGSNVRVRILGYRHLEGLATGILKASAFEGSVFTHS DVKPGMATRAKIIAVDSFGAIVQFPGGVKALCPLRHMSEFEIVKPRKKFKVGAELFFRVLGCKSKRITVTHKKTLVKSKLPILSSYSDATDGLITHGWIT KIEKPGCFVHFYNGVQGFAPRSELGLEPGSDAISTYQVGQVVKCRVISSIAASRRINLSFIMKPLRFSEEDGIKMGSVVTGVIDKVTASSVIVYVNAKDY LKGTIATEHLSDHHEHAALMKSVLKPGYEFDQLLVLDIESNNLALSAKYSLIKSASQLPSDLSQIRPQSIVHGYICNMIETGCFVRFLGNLTAFSPRSKA MDDQRSQLSEAFYIGQSVRSNILDVNNETSRITVSLKQSCCSSTDACFLQEYFLSENKIADLQSSDSKGRDLKWVEGFHIGSTIEGKIQESKEFGVVVSF EKHNDVFGFVSHHQLGGAMVKAGANVRAAVLDVAKTERLVDLSLKLEFLDKSRDKSSNSLTHKKKRKGEMSKDLEVHQTVNAVVEIVKENYLVLSIPEHN YAIGYASVSDYNTQKISQKQFLNGQSVSATVMALPTPSTAGRLLLLLKSISEVTETSSSKKAKRKSSCNVGSLVQAEITEIKPLEMRLKFGIGFRGRIHI TEVNDTCLLENPFSNFRVGQTVSARIIAKAGQSDNKKSQLWDLSIKPKMLEDSCMIEDKLVPKEYEFSSGQHVSGYVYKVDGEWAWLTISRHLKAKLFVL DSACEPSELQEFQKRFYVGKAVTGHVLNYNKEKASLRLALHPFAASQTLVDGGAPIMDDLQGNAPWDNVTAHIREGDIVGGRISKILPGVGGLLVQLGPH IHGRVHFTELQDSWVPDPLSAYKEGQFVKSKVLEISHPVKGTIHIDLSLRLSLNGMLGQNSAEFSNNQDAPSKHVDKIEDLQPDMVVQGYVKNVSSKGCF ISLSRKLDAKILLSNLSEGYIDDPEKEFPIGKLLTGRVLSVEHLSKRIEVTLKKSGVSNASKSENSDLSRLHVGEIISGRIKRVESYGLFIALDHTNLVG LCHVSQLLDHIGNIESKYKAGEKVTAKILKVDEERRRISLGMKNLDVRDDMNSSKEESDEEKSENESMDDSNAQIKIIPESSLLGIHNIDVECQNERSIL AQAESRASIPPLEVALDDTEHSHPDDVLLQNQGHIDEADTMVKKNKQEKKKPKKLSEQEISAAEERRLEEDEPRTADEFEMVIRSSPNNSFLWIAYMRFM LSLADIEKARSIAERALNTINIREEDEKLNIWVAYFNLENEYGNPPEDAVKKVFQRALQYCDPKKVHLALLKMYKKTNQNKLAEELLDKMIKKFKHSCKF WLKRVKWLLKQKQDGVQSVVQRALLCLPRHKHIKFISQTAIREFKCGVADRGRTLFEEILREYPKRTDLWSVYLDQEIKLGDADVIRSLFERAISLSLPP KKMKFLFKKYLEYEKSYGDEKQIESVKQKAMEYVQNTLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11964			RNA binding;RNA binding (.1)		Potri.016G062600 [exp]	0	1
AT3G57660		NRPA1	nuclear RNA polymerase A1 (.1)		Potri.006G055300 [exp]	1.41	0.9259
AT3G06530			ARM repeat superfamily protein...		Potri.003G151500 [exp]	1.73	0.9146
AT1G10490			Domain of unknown function (DU...		Potri.007G079300 [exp]	2.00	0.9008
AT1G29940		NRPA2	nuclear RNA polymerase A2 (.1)		Potri.001G030750 [exp]	2.00	0.9243
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Potri.001G423600 [exp]	3.16	0.8924
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Potri.009G120900 [exp]	3.74	0.8757
AT1G06720			P-loop containing nucleoside t...		Potri.017G017700 [exp]	4.47	0.8679
AT4G04940			transducin family protein / WD...		Potri.006G078900 [exp]	6.48	0.8804
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Potri.003G220100 [exp]	6.63	0.8427
AT3G52140			tetratricopeptide repeat (TPR)...		Potri.009G065300 [exp]	6.70	0.8522

Compare expression of checked genes

Potri.016G062600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.