Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24420 253 / 4e-84 alpha/beta-Hydrolases superfamily protein (.1) AT3G03990 246 / 1e-81 alpha/beta-Hydrolases superfamily protein (.1) AT4G37470 242 / 5e-80 alpha/beta-Hydrolases superfamily protein (.1) AT5G19850 56 / 9e-09 alpha/beta-Hydrolases superfamily protein (.1) AT4G24160 52 / 1e-07 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G09430 47 / 5e-06 alpha/beta-Hydrolases superfamily protein (.1) AT5G38520 45 / 3e-05 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G155500 [exp] 288 / 9e-98 AT3G24420 331 / 8e-115 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G118900 [exp] 263 / 3e-88 AT3G03990 440 / 4e-158 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G016500 [exp] 257 / 8e-86 AT3G03990 434 / 1e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G052000 [exp] 250 / 5e-83 AT4G37470 451 / 3e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G145000 [exp] 245 / 4e-81 AT4G37470 468 / 7e-169 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G219700 [exp] 57 / 5e-09 AT5G19850 504 / 6e-180 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G313100 [exp] 50 / 4e-07 AT5G09430 466 / 7e-167 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G027300 [exp] 50 / 1e-06 AT4G24160 640 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.005G235200 [exp] 48 / 4e-06 AT4G24160 645 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013541 [exp] 343 / 2e-119 AT3G03990 234 / 7e-77 alpha/beta-Hydrolases superfamily protein (.1) Lus10017296 [exp] 341 / 1e-118 AT3G03990 232 / 7e-76 alpha/beta-Hydrolases superfamily protein (.1) Lus10018686 [exp] 256 / 3e-85 AT3G03990 448 / 4e-161 alpha/beta-Hydrolases superfamily protein (.1) Lus10014859 [exp] 253 / 3e-84 AT4G37470 442 / 5e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10033087 [exp] 252 / 2e-83 AT3G24420 281 / 3e-95 alpha/beta-Hydrolases superfamily protein (.1) Lus10019303 [exp] 251 / 4e-83 AT4G37470 433 / 4e-155 alpha/beta-Hydrolases superfamily protein (.1) Lus10017735 [exp] 243 / 4e-80 AT3G24420 290 / 2e-98 alpha/beta-Hydrolases superfamily protein (.1) Lus10037651 [exp] 238 / 3e-78 AT4G37470 414 / 1e-147 alpha/beta-Hydrolases superfamily protein (.1) Lus10010398 [exp] 202 / 2e-64 AT4G37470 335 / 1e-116 alpha/beta-Hydrolases superfamily protein (.1) Lus10015633 [exp] 124 / 2e-35 AT4G37470 188 / 1e-60 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.016G062700.1 pacid=42809523 polypeptide=Potri.016G062700.1.p locus=Potri.016G062700 ID=Potri.016G062700.1.v4.1 annot-version=v4.1 ATGGATGTGCTATATCATGAGCATGGTTATGGAGGAGGTACTTTTGAAGCCCTAAATGGTAGGATCTACGGCAATGGCACTGAAACCCTGGTCCTGGCTC ATGGTTATGGTGCAGACCAGAGCGTGTGGTACCACCTGATACCTTATCTTGCTTGTTACTTCAAGGTGGTGGTTTTTGACTTGGTTTTCTCTGCAAATGT TAGCCCAGGCCTTTATAATCCAAAGAAATACTCGAGTTTCAAAGGGTATGCAAGTGACATGGTGAACCTTCTTGATGAACTGAGAGTGAACGAGACAATC TTCGTAGGCCATTCCATGTCTGCCATGATCGGATGCATTGCTTCAATTAAGCGTCCTGAACTCTTCCGGCACCTTGTTTTACTCGGTGGCTCTCCGAGGT ACCTTGATGAAAAAGGATACAATGGGGGCTTTACGAGATCAGAGATCAACGCTATCTTTAAGCACATGCATCAGAATTACACGAGCTGGGTTCAAGCTTT TGCTCCAACAGCTATTGGTATGAACAACACTCGAGCAACAACAGAGTTCAAAAACAGCCTGAGGAGAATGAAACCCAGGATTGCGCTCAGTGTGGCTAAA ACAGTGTTTTTAAGTGATTGGAGAAGCATTCTTCCAGAAGTTTTGGTGCCTTGCACTATAATCCAGTCCAAAAGAGATCCTATAGTTCCAAACTCCGTGG CCTATTACATGAAGAGAAATCTTAACGGGCATGCCAGGGTTAAAATTCTGGACACTGGAGGCCATTTTCCTCAGCTTACAGCTTACAATTTGCTATTGAA AGTTCTGAAAAGATTTCTTGTGAACGACTAG
AA sequence Show only first row Show all	>Potri.016G062700.1 pacid=42809523 polypeptide=Potri.016G062700.1.p locus=Potri.016G062700 ID=Potri.016G062700.1.v4.1 annot-version=v4.1 MDVLYHEHGYGGGTFEALNGRIYGNGTETLVLAHGYGADQSVWYHLIPYLACYFKVVVFDLVFSANVSPGLYNPKKYSSFKGYASDMVNLLDELRVNETI FVGHSMSAMIGCIASIKRPELFRHLVLLGGSPRYLDEKGYNGGFTRSEINAIFKHMHQNYTSWVQAFAPTAIGMNNTRATTEFKNSLRRMKPRIALSVAK TVFLSDWRSILPEVLVPCTIIQSKRDPIVPNSVAYYMKRNLNGHARVKILDTGGHFPQLTAYNLLLKVLKRFLVND

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24420			alpha/beta-Hydrolases superfam...		Potri.016G062700 [exp]	0	1
AT4G00165			Bifunctional inhibitor/lipid-t...		Potri.014G059800 [exp]	2.23	0.9999
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Potri.006G142600 [exp]	3.16	0.9998
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Potri.004G054600 [exp]	3.87	0.9998
AT5G62360			Plant invertase/pectin methyle...		Potri.015G128400 [exp]	6.32	0.9998
AT4G38770		ATPRP4, PRP4	ARABIDOPSIS THALIANA PROLINE-R...		Potri.009G129900 [exp]	7.07	0.9998	PRP4.4
AT5G54010			UDP-Glycosyltransferase superf...		Potri.011G097900 [exp]	7.14	0.9990
					Potri.007G113350 [exp]	7.74	0.9997
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Potri.006G243600 [exp]	7.93	0.9982
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Potri.006G243700 [exp]	8.12	0.9979	Pt-RD22.1
					Potri.011G073116 [exp]	8.77	0.9997

Compare expression of checked genes

Potri.016G062700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.