Plant FIBer expression Database

Potri.016G062900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G11950 486 / 2e-169 ATHST TRAF-like superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016218
[exp]
488 / 1e-170 AT3G11950 488 / 4e-168 TRAF-like superfamily protein (.1.2)
Lus10029325
[exp]
486 / 7e-168 AT3G11950 483 / 9e-164 TRAF-like superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0389 TRAF PF02176 zf-TRAF TRAF-type zinc finger
Representative CDS sequence
>Potri.016G062900.2 pacid=42809724 polypeptide=Potri.016G062900.2.p locus=Potri.016G062900 ID=Potri.016G062900.2.v4.1 annot-version=v4.1
ATGGATCTTCCTACAAATGATGTGGAGCTTGTGCGAGAAGATGAGAAAGAGAGAGGACTCACATTTCATTGTGAGCTCTATGACACAGAAATAGTTCGCA
AGATAGCTCAAGCTTTTCTCCCTGGATTATCCTCGGCTTGTGTTGATAACACAACTGGGGATATGTTTAGGAACCCTGGTTCTGTGGCTGCTGATATTAG
GAAAGAAATGGTTGATTATCTGACCCAGAGAAGTGAAAGTTTTGTTGCGGAATCAGTTGTACTAGAAGGTGATCTAGATGGGGAGGTGTCCGACCATCCA
TATGATATCATTTCTAACATGGTTGATGACTTTGCGAGTTTGAAAAGGAATTTGTTTAGTCGGGTTTCAGGATGGTTACTGAGTGAAAAGAGAGAAGATA
AAATAGATGATTTCGTGCAAGAGATGGAAATAAATGGGTTTTGGTTGTTGGACAGGAGAGAAGCGGTTGCACAGATTTTGGTTAAGAATGTTGACTTCAA
GAACATTTTTCATTGTGACAAGAAGTTCAACACTGCTGAAGAGCTTGTTGAGCATGTTGTCAACTGTGGATTTAGGACCATGAACTGCACAAATGAGGGG
TGCTCAACAGTATTTTGTGCAAGCCATTTGGAGAAGCATGATTCAGCTTGTCCATTCAAAATAATCCCTTGTGAGCAGCAGTGCTCAGAAAACATCATGA
GACGTGAAATGGATCGGCACTGCATAACTGTCTGTCCTATGAAGATTGTGAGCTGTCCTTTCTATGCAGTGGGTTGTCAGTCCACTATGCCTCATTCTAT
AATTCAGCAACATCGTTCCGACAATCTCCATTCACACTTGCTATATACTCTTAAAAGTATTCACAAGGGAGGATCAGAGGAGGATCTGAAAAAACGTGTT
GACCAAATAGTGGAGTCATCCCCTGGTCGACTAGCAGATGCTAGGGATGCGAGATCTCTAATCCTCAAAGTCAAGGATGTTGAAGCAAAGCTTGGGCCTT
TGGAAGTTAAAGCTGCTGAAAAGGTTAGTGAAGAACCCAACAAGGCTGGAGAGAACAGTAGTGAAGAACCCATTGAAGCTTTCAACAAGGGTGGTGATGA
ATCGACTGAGGTAGACAAAATTGGCAGTGAAAAGTCCAATGAGACCATAAATAAGGTTGGTGAAGAACTGTCGAGCATTCAAATTTAA
AA sequence
>Potri.016G062900.2 pacid=42809724 polypeptide=Potri.016G062900.2.p locus=Potri.016G062900 ID=Potri.016G062900.2.v4.1 annot-version=v4.1
MDLPTNDVELVREDEKERGLTFHCELYDTEIVRKIAQAFLPGLSSACVDNTTGDMFRNPGSVAADIRKEMVDYLTQRSESFVAESVVLEGDLDGEVSDHP
YDIISNMVDDFASLKRNLFSRVSGWLLSEKREDKIDDFVQEMEINGFWLLDRREAVAQILVKNVDFKNIFHCDKKFNTAEELVEHVVNCGFRTMNCTNEG
CSTVFCASHLEKHDSACPFKIIPCEQQCSENIMRREMDRHCITVCPMKIVSCPFYAVGCQSTMPHSIIQQHRSDNLHSHLLYTLKSIHKGGSEEDLKKRV
DQIVESSPGRLADARDARSLILKVKDVEAKLGPLEVKAAEKVSEEPNKAGENSSEEPIEAFNKGGDESTEVDKIGSEKSNETINKVGEELSSIQI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G11950 ATHST TRAF-like superfamily protein ... Potri.016G062900
[exp]
0 1
AT2G26730 Leucine-rich repeat protein ki... Potri.018G074300
[exp]
5.29 0.8482
AT1G13250 GATL3 galacturonosyltransferase-like... Potri.010G129400
[exp]
8.24 0.8433
AT4G23740 Leucine-rich repeat protein ki... Potri.003G136100
[exp]
9.43 0.8503
AT3G55440 CYTOTPI, ATCTIM... CYTOSOLIC ISOFORM TRIOSE PHOSP... Potri.008G056300
[exp]
15.49 0.7896 CTIMC.1
AT2G42590 GENERALREGULATO... general regulatory factor 9 (.... Potri.001G392200
[exp]
15.49 0.8433 Pt-GF14.4
AT1G20330 FRL1, CVP1, SMT... FRILL1, COTYLEDON VASCULAR PAT... Potri.005G245800
[exp]
19.18 0.8192 SMT1.2
AT4G38430 ATROPGEF1, ROPG... rho guanyl-nucleotide exchange... Potri.009G140100
[exp]
20.56 0.7897
AT2G22170 Lipase/lipooxygenase, PLAT/LH2... Potri.005G076900
[exp]
20.97 0.8166
AT1G31850 S-adenosyl-L-methionine-depend... Potri.003G102400
[exp]
21.16 0.8022
AT1G70370 PG2 polygalacturonase 2 (.1.2) Potri.008G190000
[exp]
23.95 0.8120

Potri.016G062900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.