Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58480 587 / 0 calmodulin-binding family protein (.1) AT3G13600 472 / 2e-160 calmodulin-binding family protein (.1) AT4G33050 393 / 3e-131 EDA39 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) AT2G26190 385 / 9e-128 calmodulin-binding family protein (.1) AT5G57010 373 / 2e-123 calmodulin-binding family protein (.1) AT3G52870 349 / 9e-115 IQ calmodulin-binding motif family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G197500 [exp] 1004 / 0 AT3G58480 588 / 0.0 calmodulin-binding family protein (.1) Potri.003G218800 [exp] 597 / 0 AT3G13600 734 / 0.0 calmodulin-binding family protein (.1) Potri.001G006200 [exp] 548 / 0 AT3G13600 697 / 0.0 calmodulin-binding family protein (.1) Potri.001G005600 [exp] 418 / 7e-143 AT3G13600 431 / 4e-148 calmodulin-binding family protein (.1) Potri.018G061901 [exp] 420 / 4e-141 AT4G33050 601 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Potri.006G226400 [exp] 405 / 2e-135 AT4G33050 598 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Potri.006G147900 [exp] 380 / 2e-125 AT2G26190 513 / 2e-178 calmodulin-binding family protein (.1) Potri.006G114700 [exp] 343 / 3e-112 AT3G52870 561 / 0.0 IQ calmodulin-binding motif family protein (.1) Potri.006G226500 [exp] 317 / 6e-104 AT4G33050 433 / 9e-151 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016219 [exp] 576 / 0 AT3G58480 569 / 0.0 calmodulin-binding family protein (.1) Lus10039178 [exp] 555 / 0 AT3G13600 697 / 0.0 calmodulin-binding family protein (.1) Lus10013759 [exp] 546 / 0 AT3G58480 690 / 0.0 calmodulin-binding family protein (.1) Lus10016052 [exp] 522 / 0 AT3G13600 582 / 0.0 calmodulin-binding family protein (.1) Lus10025173 [exp] 521 / 1e-180 AT3G13600 575 / 0.0 calmodulin-binding family protein (.1) Lus10029324 [exp] 486 / 6e-168 AT3G58480 472 / 6e-163 calmodulin-binding family protein (.1) Lus10013526 [exp] 393 / 3e-130 AT5G57010 581 / 0.0 calmodulin-binding family protein (.1) Lus10014872 [exp] 389 / 1e-128 AT4G33050 577 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Lus10035595 [exp] 351 / 7e-115 AT3G52870 575 / 0.0 IQ calmodulin-binding motif family protein (.1) Lus10003257 [exp] 349 / 9e-115 AT3G52870 576 / 0.0 IQ calmodulin-binding motif family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.016G063000.1 pacid=42809191 polypeptide=Potri.016G063000.1.p locus=Potri.016G063000 ID=Potri.016G063000.1.v4.1 annot-version=v4.1 ATGATACTTGAAGAATGCCTTAGCTTTAAGGAGAGGGAATCCAGTACCACATTCTCCTTCAAAAGTACCGCCTCGGATATGGATGTGCTCGCTAGATCAA TCATTAGTCCTCAAGTTGGAGAAAAGGGTAATCAGTTGACAAGGACAGATAGCTTGCCTGACAAAAAACTTAACTTGTCATTGCTTGAGTCAGGGAACCA AAGACACCAGGCCGCGGTGACATTGCAGAAAGTGTATAAAAGCTTCAGAACCAGGAGGCAGCTGGCTGATTGTGCTGTTGTTGTCGAGCAGAGATGGTGG AAGTTGTTGGAATTTGCAGAACTCAAGAGAAGCTCCATATCTTTTTTTGATATTGAGAAACCTGAGACTGCAATTTCACGTTGGTCCAGAGCAAGAATGA GAGCTGCTAAGGTAGGAAAAGGCTTGTCGAAGGATGCAAAGGCTCGGAAGCTAGCTTTACTGCATTGGCTAGAGGCAATTGATCCACGGCATCGTTATGG ACACAACCTTCAATTTTATTATGTCAATTGGCTTCATTGCCAGAGCACACAGCCTTTCTTCTATTGGCTCGATATTGGAGCTGGGAAAGAAGTGAACCTT GATAGATGTGCTAGATCCAAGCTTCAACAACAATGCATCAAATATCTTGGTCCTGCTGAAAGAGAAGCTTTTGAAGTAGCAGTGCAGAATGGGAGATTAT TATATAAACAAAGTGGGAAACTTCTCCATACAACAGAAGGACCGAAGGATGCCAAATGGATTTTTGTTCTCAGTACATCAAAGACCTTGTATGTTGGTCT GAAGATCAAGGGAACGTTTCAACATTCAAGTTTCTTGGCTGGTGGAGCCACTCTATCTGCTGGAAGATTAGTCGTGGAAGATGGTGTTCTCAAGGCAGTT TGGCCTCACAGCGGCCATTATCTCCCAACAGATGAAAACTTCCAGGCATTCATGTCATTCCTCAGGGAACAGAGCGTAGATCTAACCGATGTAAAGGAAA GCCCAACTGATGAAGAAGATGAATCTGTTATAAAGAAGGACATTCGTGGTAGCCTCCGAGACCAACCTGATGCAGATTTACTTGAAGACACCAAAGCAAC AAATGTTGAAGTCTTGGCTCTAGAGAACACAGTTTCAAGGAAACAAGATTGTAACGTGGCAGAAAATGCTAATCTGCACACATCAAAGTTGTCACGTGGA TTACAATTTAAAATTACTGAACTTGAAATACCAACAAGAGGAGATGTGCTTGACACTTTCAAAACAGAACAACTTGGACCAAGCTGCCAGGCTGAAGATC CTGATTCTTCTGGAGAAGATGGCTATGAAACGGCAGAAGATTCATTTTTGACGGAGGAAGATTTCATGATTACTAAACTCAACTTGTTTGACGAAGATAA CGAAGAAGAAAATGAGGAGCCCGTCCCCAAAGAAAAAATCCTCCAAAGGATAGATTCTCATAAAGGAATGAAGTCATATCAATTGGCGAAGCAATTACCA TCATCTAAATGGACTACTGGTGCAGGGCCACGGATAGGATGCATGAGTGATTATCCATCAGAGCTTCGATTCCGGGTTTTAGAGAATGCAAATTTGTCGC CAAGAACAAGAAGTGATAACTCATCACCACGGACCGCACCTCGGCTTAGCCCGAAGGTTTCATCACCAATGGTTTTGACACAAGCTTCATTATTGAAAGA AACATCATGCAGAAGTCCCCTTGCTCCAGACCAAGTGTTATTTTCACGAACAGCAAACCTTTAG
AA sequence Show only first row Show all	>Potri.016G063000.1 pacid=42809191 polypeptide=Potri.016G063000.1.p locus=Potri.016G063000 ID=Potri.016G063000.1.v4.1 annot-version=v4.1 MILEECLSFKERESSTTFSFKSTASDMDVLARSIISPQVGEKGNQLTRTDSLPDKKLNLSLLESGNQRHQAAVTLQKVYKSFRTRRQLADCAVVVEQRWW KLLEFAELKRSSISFFDIEKPETAISRWSRARMRAAKVGKGLSKDAKARKLALLHWLEAIDPRHRYGHNLQFYYVNWLHCQSTQPFFYWLDIGAGKEVNL DRCARSKLQQQCIKYLGPAEREAFEVAVQNGRLLYKQSGKLLHTTEGPKDAKWIFVLSTSKTLYVGLKIKGTFQHSSFLAGGATLSAGRLVVEDGVLKAV WPHSGHYLPTDENFQAFMSFLREQSVDLTDVKESPTDEEDESVIKKDIRGSLRDQPDADLLEDTKATNVEVLALENTVSRKQDCNVAENANLHTSKLSRG LQFKITELEIPTRGDVLDTFKTEQLGPSCQAEDPDSSGEDGYETAEDSFLTEEDFMITKLNLFDEDNEEENEEPVPKEKILQRIDSHKGMKSYQLAKQLP SSKWTTGAGPRIGCMSDYPSELRFRVLENANLSPRTRSDNSSPRTAPRLSPKVSSPMVLTQASLLKETSCRSPLAPDQVLFSRTANL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58480			calmodulin-binding family prot...		Potri.016G063000 [exp]	0	1
AT5G53900			Serine/threonine-protein kinas...		Potri.011G116400 [exp]	1.41	0.8428
AT5G25930			Protein kinase family protein ...		Potri.018G088100 [exp]	2.44	0.7856
AT3G18670			Ankyrin repeat family protein ...		Potri.011G016300 [exp]	5.65	0.7655
AT1G53440			Leucine-rich repeat transmembr...		Potri.016G061500 [exp]	9.89	0.7117
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.012G070300 [exp]	10.24	0.6670
AT1G55790			Domain of unknown function (DU...		Potri.001G438100 [exp]	12.00	0.7676
AT3G18670			Ankyrin repeat family protein ...		Potri.006G281600 [exp]	13.19	0.7318
AT1G16390		3-Oct, ATOCT3	organic cation/carnitine trans...		Potri.016G039000 [exp]	13.85	0.7200
AT4G00770			unknown protein		Potri.014G077400 [exp]	16.49	0.7030
					Potri.011G125251 [exp]	16.88	0.7470

Compare expression of checked genes

Potri.016G063000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.