Plant FIBer expression Database

Pt-RPS5.1 (Potri.016G063200) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-RPS5.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G37270 359 / 3e-128 ATRPS5B ribosomal protein 5B (.1.2)
AT3G11940 356 / 1e-126 AML1, ATRPS5A ARABIDOPSIS MINUTE-LIKE 1, ribosomal protein 5A (.1.2)
ATCG00900 52 / 1e-08 ATCG00900.1, RPS7.1 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1)
ATCG01240 52 / 1e-08 ATCG01240.1, RPS7.2 ribosomal protein S7 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G197700
[exp]
382 / 3e-137 AT3G11940 358 / 2e-127 ARABIDOPSIS MINUTE-LIKE 1, ribosomal protein 5A (.1.2)
Potri.013G138900
[exp]
51 / 3e-08 ATCG00900 310 / 2e-110 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1)
Potri.004G140500
[exp]
45 / 1e-05 ATCG00900 249 / 2e-85 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013381
[exp]
362 / 6e-129 AT2G37270 370 / 1e-132 ribosomal protein 5B (.1.2)
Lus10000946
[exp]
358 / 2e-127 AT2G37270 374 / 8e-134 ribosomal protein 5B (.1.2)
Lus10008436
[exp]
363 / 3e-127 AT3G11940 371 / 3e-130 ARABIDOPSIS MINUTE-LIKE 1, ribosomal protein 5A (.1.2)
Lus10004113
[exp]
325 / 5e-113 AT2G37270 339 / 1e-118 ribosomal protein 5B (.1.2)
Lus10002394
[exp]
51 / 9e-08 ATCG00900 229 / 3e-77 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1)
Lus10027894
[exp]
41 / 0.0002 ATCG00900 167 / 7e-53 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00177 Ribosomal_S7 Ribosomal protein S7p/S5e
Representative CDS sequence
>Potri.016G063200.5 pacid=42809370 polypeptide=Potri.016G063200.5.p locus=Potri.016G063200 ID=Potri.016G063200.5.v4.1 annot-version=v4.1
ATGGCAGAAGCTGTGGTGGCTCCACCAAACCCAGAAGCTAACCAGGCTATCTACGATGTCAAGCTCTTCAATCGCTGGTCTTTCGATGATATTAATGTAA
ATGACATTTCTCTTGCTGACTATGTTGGAGTCCAAGTTAAGCACGCAACATATGTCCCCCATACAGCTGGAAGATACTCTGTCAAGCGTTTCAGGAAGGC
CCAGTGCCCAATTGTTGAGAGGCTCACAAACTCTCTTCAGATGCACGGCAGAAACAATGGGAAAAAATTGAAGGCTGTGACCATTGTCAAACATGCCATG
GAGATCATTCATCTTTTGACTGATCAGAACCCAATCCAAGTTATTGTTGATGCTGTGGTCAACAGTGGGCCTCGTGAAGATGCCACTCGTATTGGCTCAG
CTGGTGTTGTCAGACGTCAGGCTGTTGATATTTCACCTCTTAGGCGTGTAAACCAGGCCTTGTATCTCCTTACCACTGGTGCTCGTGAGGCAGCTTTCAG
GAACATCAAGACCATAGCTGAATGCTTGGCTGATGAACTTATCAATGCAGCCAAGGGTTCCTCAAACAGCTATGCCATTAAGAAGAAAGATGAGATTGAA
AGAGTTGCTAAGGCCAACCGTTGA
AA sequence
>Potri.016G063200.5 pacid=42809370 polypeptide=Potri.016G063200.5.p locus=Potri.016G063200 ID=Potri.016G063200.5.v4.1 annot-version=v4.1
MAEAVVAPPNPEANQAIYDVKLFNRWSFDDINVNDISLADYVGVQVKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLQMHGRNNGKKLKAVTIVKHAM
EIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQALYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIE
RVAKANR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G37270 ATRPS5B ribosomal protein 5B (.1.2) Potri.016G063200
[exp]
0 1 Pt-RPS5.1
AT4G18100 Ribosomal protein L32e (.1) Potri.002G249000
[exp]
1.41 0.9635
AT2G47110 UBQ6 ubiquitin 6 (.1.2) Potri.015G111500
[exp]
4.58 0.9599 Pt-UBI.4
AT1G57720 Translation elongation factor ... Potri.019G077000
[exp]
4.69 0.9428
AT2G09990 Ribosomal protein S5 domain 2-... Potri.001G304700
[exp]
5.29 0.9614 RPS16.3
AT3G56340 Ribosomal protein S26e family ... Potri.013G093700
[exp]
5.65 0.9476 RPS26.1
AT4G16720 Ribosomal protein L23/L15e fam... Potri.002G141500
[exp]
6.63 0.9490 Pt-RPL15.6
AT1G57860 Translation protein SH3-like f... Potri.016G061100
[exp]
7.00 0.9530
AT2G09990 Ribosomal protein S5 domain 2-... Potri.008G150000
[exp]
8.48 0.9587
AT2G46290 Transducin/WD40 repeat-like su... Potri.008G141400
[exp]
8.94 0.9522 Pt-TRIP.2
AT2G32060 Ribosomal protein L7Ae/L30e/S1... Potri.002G056200
[exp]
9.79 0.9489 Pt-RPS12.2

Potri.016G063200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.