Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20710 345 / 8e-114 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G21705 259 / 9e-81 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02150 250 / 1e-76 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G60770 234 / 7e-71 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G27460 201 / 2e-58 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G28020 202 / 9e-58 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02820 195 / 8e-56 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G02370 182 / 3e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G01990 179 / 3e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09450 147 / 4e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G063400 [exp] 484 / 1e-167 AT2G20710 349 / 3e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G132700 [exp] 357 / 4e-118 AT2G20710 387 / 2e-130 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G133000 [exp] 328 / 1e-107 AT2G20710 310 / 1e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G132500 [exp] 324 / 5e-106 AT2G20710 388 / 4e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.011G120900 [exp] 297 / 6e-95 AT4G21705 483 / 8e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G051500 [exp] 289 / 5e-92 AT4G21705 605 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G042500 [exp] 271 / 4e-85 AT4G21705 608 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G050300 [exp] 249 / 5e-76 AT1G02150 698 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G157400 [exp] 247 / 5e-76 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018588 [exp] 315 / 8e-102 AT2G20710 303 / 2e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10016229 [exp] 305 / 3e-99 AT2G20710 269 / 7e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10033698 [exp] 286 / 1e-90 AT2G20710 349 / 4e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10001213 [exp] 276 / 8e-87 AT4G21705 500 / 2e-174 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005855 [exp] 273 / 8e-86 AT4G21705 503 / 5e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003590 [exp] 268 / 1e-83 AT4G21705 434 / 2e-148 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013047 [exp] 247 / 6e-76 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024781 [exp] 246 / 7e-75 AT1G02150 599 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009787 [exp] 242 / 1e-73 AT1G02150 600 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000091 [exp] 224 / 7e-68 AT4G21705 426 / 8e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Potri.016G063300.1 pacid=42810069 polypeptide=Potri.016G063300.1.p locus=Potri.016G063300 ID=Potri.016G063300.1.v4.1 annot-version=v4.1 ATGTCCATGTCAGTCTTCAAGACGATGAAACTTGTTCCATTAACCGTAAAAACACTGCACCACAGGATCATCAGAAACACTGTAATGGGTCCTCGAAGAC AGCCACTTATCATTAATCGTTCGTACTCGACAACCCCAACTGGAAGAACAAAAAAGCCATGGACAGATGCAATGAACGTGCTGTACAACAGAATATCGTC ACTTGCAGATCAAAGGATCACCATTTCACTATTTCTCAATCACTGGGTCCTTGAAGGACAACCCGTCAACAAAAATCAGCTCCGTGAATTCATCAAGGAG CTCCGGTTCCACAAACGATATGCTCATGCTCTTGAGATTTCAACGTGGATGACTGACAGTGGGTACTTTGAACTTGCATCACAAGATGTAGCCGTTCAGC TGGACTTGATCTCAAAGGTTCATGGGATAGAACAAGCACAGAAGCTCTTCAATAACACTCCACAACACTTAAAAGTTCTAAAGGTTTATAGTGCACTCCT CAACTGCTATGCCAAAGCAAAATTGGTGGAAAAAGCAGAGTCTGTCGTGCAGGAGATGAAGAGCCTAGGTTTTGCCAACACATTGTTGGTTTACAATGTC ATCCTTAATTTTTATTATCAGACTGGAAACCCTGATAAAATCAACAGTCTGATGCAAGAAATGGAACAAAATGGTATTGGCTGCGACAAATTTGCACATT CCATACAACTGAGTGCATACGCATCTGTTTCTGACATTGTAGGCATTGAGAAGACTCTGGCAAAAATGGAATCTGATCCCAACGTTTTCTTGGACTGGAC CTCGTACACTGCTGCTGCAAAAGGATATATAAAAGTTGGACTTGTTGACAAGGCTCTGGAAATGCTGGAGAAATCTGAGAGACTAGTTACAGGTAAAAGA AGGGGAACAGCATATGATTCTCTAATCACCCTATATGCTGCAACTGGGAAGACAAATGAAGTCTTAAGAATTTGGGAACTTTACAAGAAAAACGAGAAGG TTTACAAAGAGGCATATATTAGTATCATAACCTCTCTATTGAAGTTAGATGACTTTGAAAATGCAGAAAAGATTTTCGAGGAGTGGGAGTTCCAGAATCA TTCTTGTTATGATATCCATATTCCAAACTTCCTTATTGATGCCTATTCGAGAAAAGGTCTCGTGGAGAAGGCTGAAACATTAATTGATAGGGCAATATCA AAAGGAGGGGAACCTAATGCAAAAACATGGTACCATTTGGCAACAGGGTATCTTCAGAATGGCCAAACTCTGAAGGCCGTGGAAGCAATGAAGAAAGCAG TAGTGGTTTCTGGACGAATGTGGAAGCCAAGCAATGAAATTTTAGCTAACTGTTTGGGGTACTTGAAAGTGGAGGGAGATTTGGGGAAACTGACGAATTT CATGGACTTACTTAGGGATAATGATATTATTTCCTTGGATATTCAAGAAAGATTGTTGAATCACATTAAGAATGCGAAGTCAAGCTCAGATGTGCTGGGT GCTTTGAATAACAATTAA
AA sequence Show only first row Show all	>Potri.016G063300.1 pacid=42810069 polypeptide=Potri.016G063300.1.p locus=Potri.016G063300 ID=Potri.016G063300.1.v4.1 annot-version=v4.1 MSMSVFKTMKLVPLTVKTLHHRIIRNTVMGPRRQPLIINRSYSTTPTGRTKKPWTDAMNVLYNRISSLADQRITISLFLNHWVLEGQPVNKNQLREFIKE LRFHKRYAHALEISTWMTDSGYFELASQDVAVQLDLISKVHGIEQAQKLFNNTPQHLKVLKVYSALLNCYAKAKLVEKAESVVQEMKSLGFANTLLVYNV ILNFYYQTGNPDKINSLMQEMEQNGIGCDKFAHSIQLSAYASVSDIVGIEKTLAKMESDPNVFLDWTSYTAAAKGYIKVGLVDKALEMLEKSERLVTGKR RGTAYDSLITLYAATGKTNEVLRIWELYKKNEKVYKEAYISIITSLLKLDDFENAEKIFEEWEFQNHSCYDIHIPNFLIDAYSRKGLVEKAETLIDRAIS KGGEPNAKTWYHLATGYLQNGQTLKAVEAMKKAVVVSGRMWKPSNEILANCLGYLKVEGDLGKLTNFMDLLRDNDIISLDIQERLLNHIKNAKSSSDVLG ALNNN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20710			Tetratricopeptide repeat (TPR)...		Potri.016G063300 [exp]	0	1
AT1G54380			spliceosome protein-related (....		Potri.007G124150 [exp]	2.00	0.9093
AT1G40390			DNAse I-like superfamily prote...		Potri.003G024501 [exp]	3.46	0.8931
AT1G67440		EMB1688	embryo defective 1688, Minichr...		Potri.016G023500 [exp]	5.29	0.8600
AT3G18840			Tetratricopeptide repeat (TPR)...		Potri.009G113500 [exp]	5.65	0.9077
AT2G44200			CBF1-interacting co-repressor ...		Potri.016G000501 [exp]	6.00	0.8812
AT5G46570		BSK2	BR-signaling kinase 2 (.1)		Potri.014G179300 [exp]	7.34	0.8724
					Potri.005G067901 [exp]	7.41	0.8812
AT1G55590			RNI-like superfamily protein (...		Potri.011G169800 [exp]	8.06	0.8293
AT3G47790		ABCA8, ATATH7	ATP-binding cassette A8, ABC2 ...		Potri.013G123401 [exp]	10.39	0.8809
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Potri.005G010133 [exp]	10.77	0.8516

Compare expression of checked genes

Potri.016G063300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.