Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20710 350 / 2e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G02150 250 / 2e-76 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21705 240 / 5e-73 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G28020 217 / 4e-63 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G60770 202 / 6e-59 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G27460 200 / 5e-58 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02370 197 / 1e-56 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02820 195 / 1e-55 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G01990 183 / 2e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G80270 149 / 7e-39 PPR596 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G063300 [exp] 513 / 3e-179 AT2G20710 345 / 1e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G132700 [exp] 375 / 3e-125 AT2G20710 387 / 2e-130 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G132500 [exp] 344 / 2e-113 AT2G20710 388 / 4e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G133000 [exp] 337 / 1e-110 AT2G20710 310 / 1e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.011G120900 [exp] 309 / 2e-99 AT4G21705 483 / 8e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G051500 [exp] 287 / 3e-91 AT4G21705 605 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G042500 [exp] 277 / 4e-87 AT4G21705 608 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G050300 [exp] 273 / 3e-85 AT1G02150 698 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G139400 [exp] 261 / 9e-81 AT1G02150 714 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016229 [exp] 323 / 4e-106 AT2G20710 269 / 7e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10018588 [exp] 305 / 8e-98 AT2G20710 303 / 2e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10033698 [exp] 305 / 1e-97 AT2G20710 349 / 4e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10003590 [exp] 278 / 3e-87 AT4G21705 434 / 2e-148 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001213 [exp] 268 / 8e-84 AT4G21705 500 / 2e-174 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005855 [exp] 266 / 5e-83 AT4G21705 503 / 5e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024781 [exp] 254 / 1e-77 AT1G02150 599 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009787 [exp] 253 / 3e-77 AT1G02150 600 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000091 [exp] 228 / 4e-69 AT4G21705 426 / 8e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013047 [exp] 229 / 7e-69 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Potri.016G063400.1 pacid=42810141 polypeptide=Potri.016G063400.1.p locus=Potri.016G063400 ID=Potri.016G063400.1.v4.1 annot-version=v4.1 ATGCAGCAAATGAATCTCCTTCGATTAGCCTATATATCCTCTACGATCAGTCGCTTGAATCCCAAAAACGTAGTGGGCATTCGATTTTTTTACTCAAAAA TACAAAACCCAAGATCTAGAGAGCCACCGTGGAAAGGCCCCTTCAACCGACTGTCACGTCGTCTTTCAAGAATCAGAGACCACAATGTCTCAGTGATTCC AGTTCTCGACAAATGGATTCAAGAAGGAGAAACTATTTGGGAAGATTTAATCCATGCCCTAATCAAGGAGTTACGCCAGTACAGGCGTTATCATCATGCT CTTGAGATTTCGATGTGGATGACTGACAAAAGATATCTTGCTCTGACATCACGTGCTGTTGCAGTGCGGCTGGACTTGATCTCGAAAGTTCATGGGATAG AACAAGTAGAAAACTATTTCAATAACATTCCAACAAAATTAAAAGGACTTGAGAGTTATGGTGCACTTCTCAACTGCTATGCCTATGTAAAATCTGTAGA AAAAGCAGAGGCTGTGATGCAGAGAATGAGGGAATTGGGTTTTGCCAGAAAACCCTTAGTTTTCACAGTCATGCTTAACCTTTATTACAAGACCGGGAAC ACCGAGAAACTTGACCCTCTGATGCGAGAAATGGAGGAAAATGGCATTTCTTTTGATAAATTTGCGTATTGCATACGTCTAAGTTCATATGCAGCTGCTT CTGACAGTGAGGGACTGGAGAAGACTCTAAAAAGGATAGAATCTGATCCCAATGTTGTTTTGGACTGGGCCACTTATGCTACTGTGGCAAATGGCTATTC AAAAGTTGGGCTTTTGGACAAAGCTCTGGAAATGCTAAAGAGATGCGAGAGACTGATTACTGGAGAAAGACGAAGTACACCATATGATTACCTTATGACA CAATATGCCACAACTGGGACAAAAGAAGATGTCTTGAGGGTTTGGGAACTTCACAAGAGGTATGTTGGGAATCGGAAAAATATTAGTGTCATTACCTCTC TGTTGAAGTTTGATGACCTTGAAAGCGCAGAGAAGATTTTTGAGGAGTGGGAATCCCAAAAGTTATGTGATGACATCATCATTCCAAACTTCCTTGTCGA TGCTTATTCTAGGAAAGGTCTTTTGGAGAAGGCTGAAATGCTTCTGCAGAGGACAATGTCAAATGGTACAAAACCTAATGCAAATACATGGTATTTATTG GCAAAAGGGTATCTTCAGCATAATCAAACTCCAAAGGCGGTGGAAGCAATGAAGGAAATGATAGTCTTATCTGGACCAAGGAGCAGACCCAGCACTGTAA GTTGGGTTGCCTGTTTGCAGCACCTGAAAGACTCCGGTGACATGGATAATGCAGAGGGCTTCATAAATCTACTCAGGGAAAAAGATATTATTTCTTTAGA TATTCAAGACAAATTATTGAGTTATATTAAAGACAGGGACTCGAGGTTAGATGCACTTAGTGCACTCAAAGGTAGTTCTTTACATGGAATCAGCGTCACG CATGAGATTCCAAGACCAGATCAGGCACAGAAGGATAGTAGTGATTCAGTGTCAGGTTGA
AA sequence Show only first row Show all	>Potri.016G063400.1 pacid=42810141 polypeptide=Potri.016G063400.1.p locus=Potri.016G063400 ID=Potri.016G063400.1.v4.1 annot-version=v4.1 MQQMNLLRLAYISSTISRLNPKNVVGIRFFYSKIQNPRSREPPWKGPFNRLSRRLSRIRDHNVSVIPVLDKWIQEGETIWEDLIHALIKELRQYRRYHHA LEISMWMTDKRYLALTSRAVAVRLDLISKVHGIEQVENYFNNIPTKLKGLESYGALLNCYAYVKSVEKAEAVMQRMRELGFARKPLVFTVMLNLYYKTGN TEKLDPLMREMEENGISFDKFAYCIRLSSYAAASDSEGLEKTLKRIESDPNVVLDWATYATVANGYSKVGLLDKALEMLKRCERLITGERRSTPYDYLMT QYATTGTKEDVLRVWELHKRYVGNRKNISVITSLLKFDDLESAEKIFEEWESQKLCDDIIIPNFLVDAYSRKGLLEKAEMLLQRTMSNGTKPNANTWYLL AKGYLQHNQTPKAVEAMKEMIVLSGPRSRPSTVSWVACLQHLKDSGDMDNAEGFINLLREKDIISLDIQDKLLSYIKDRDSRLDALSALKGSSLHGISVT HEIPRPDQAQKDSSDSVSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20710			Tetratricopeptide repeat (TPR)...		Potri.016G063400 [exp]	0	1
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Potri.003G193600 [exp]	1.00	0.9473
AT1G02370			Tetratricopeptide repeat (TPR)...		Potri.002G194400 [exp]	2.00	0.9347
AT1G14990			unknown protein		Potri.010G112300 [exp]	2.23	0.9212
AT1G48460			unknown protein		Potri.014G038800 [exp]	6.00	0.9270
AT4G14000			Putative methyltransferase fam...		Potri.001G321100 [exp]	10.58	0.9060
AT5G63100			S-adenosyl-L-methionine-depend...		Potri.015G082432 [exp]	12.24	0.9190
AT3G23710		AtTic22-III	translocon at the inner envelo...		Potri.002G236000 [exp]	13.07	0.9025
AT1G78930			Mitochondrial transcription te...		Potri.007G001800 [exp]	13.56	0.9138
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Potri.003G058700 [exp]	13.85	0.9217
AT2G37310			Pentatricopeptide repeat (PPR)...		Potri.006G216100 [exp]	16.30	0.9149

Compare expression of checked genes

Potri.016G063400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.