Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	TIF3.8
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56150 1018 / 0 ATTIF3C1, ATEIF3C-1, TIF3C1, EIF3C eukaryotic translation initiation factor 3C (.1.2) AT3G22860 858 / 0 ATTIF3C2, ATEIF3C-2, TIF3C2 EUKARYOTIC INITIATION FACTOR 3C-2, eukaryotic translation initiation factor 3 subunit C2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G245100 [exp] 1282 / 0 AT3G56150 1079 / 0.0 eukaryotic translation initiation factor 3C (.1.2) Potri.002G016900 [exp] 1242 / 0 AT3G56150 1095 / 0.0 eukaryotic translation initiation factor 3C (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039984 [exp] 1089 / 0 AT3G56150 1176 / 0.0 eukaryotic translation initiation factor 3C (.1.2) Lus10027702 [exp] 1085 / 0 AT3G56150 1188 / 0.0 eukaryotic translation initiation factor 3C (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF01399 [poplar] [flax] PCI PCI domain CL0123 [poplar] [flax] PF05470 [poplar] [flax] eIF-3c_N Eukaryotic translation initiation factor 3 subunit 8 N-terminus
Representative CDS sequence Show only first row Show all	>Potri.016G063500.3 pacid=42809400 polypeptide=Potri.016G063500.3.p locus=Potri.016G063500 ID=Potri.016G063500.3.v4.1 annot-version=v4.1 ATGTCGTCGCGTTTCTGGACACAGGGTGGGAGTGACTCTGACGAGGAGGAGAGTGAAAATGATGAAGATGAGGTTGAGAAGGAAGAAGCTGGGGAGTCTA CTGCCCAATCTGCTCAAAACAGATATCTTAGAGAAACTGCTAGTGATAGTGATGACTCTGATGATAAAAAACGTGTGGTCAGGTCAGCCAAAGACAAACG TTTTGAAGAGCTGTCAGCCACTGTTGATCAAATGAAGAATGCAATGAAGATTAATGACTGGGTCAGCTTGCAAGAGAGCTTTGATAAGATTAATAAGCAA CTTGAGAAAGTCATGCGGGTGATGGAATCAGAGAAGGCCCCTGCTCTTTACATCAAAGCTCTAGTAATGCTCGAAGATTTCTTGAATCAAGCTTTGGCGA ATAAGGAAGCAAAAAAGAAAATGAGCAGCAGCAATGCCAAGGCGTTGAATGCAATGAAGCAAAAATTGAAGAAAAACAATAAACAATATGAAGACCAAAT TAATAAATATAGAGAACACCCTGAAAGTGAGGAAGAACCAGAGGCTGAAGAGGAGGATGAGTCAGATTTGGAGTTTGAGGAGGACCCTTCTAAGATCGCA ATGTCCAATGAGGAGGATGAGGATAATGTGGATGACCAAACTGAAAAGGACGGGGGCTGGGAGAAGATGATGAGTAAGAAAGATAAGCTCATGGATAAGC AGTTTGCAAAAGATCCTAGTGAAATCACCTGGGATATTGTAAACAAGAAGTTTAAAGAAATTGTTGCTGCCCGGGGAAGGAGGGGAACTGGAAGGTTTGA GCAGGTTGAGCAGCTAACTTTCCTGACAAAGGTTGCTAAGACCCCTGCACAGAAGTTGGAGATTCTATTTAGTGTGGTCTCTGCCCAGTTTGATGTGAGT CCAGGTCTCAGCGGGCACATGCCAATCAATGTCTGGAAAAATTGTGTTCAGAACATGCTTATTATTCTTGACATTCTGGAACAGTATCCTAGTATTGTAG TGGATGACACAGTTGAGCCTGATGAGAATGAAACCCAAAAAGGAGGAGACCATAATGGTCCAATTCGGATTTGGGGAAACTTAGTGGCTTTTCTTGAGAG GATCGATTCTGAGTTCTTCAAGAGTTTGCAGTGCATTGATCCACATACGCATGAGTACGTTGAGAGACTGCAGGATGAACCAATGTTTTTAGTTCTTGCT CAGAATGCCCAAGAATATTTAGAGCATGTTGGAGACCTTAAAGCTGCAGCAAAGGTTGCTTTGAAACGAGTTGAGCTGATCTATTACAAACCGCAAGAGG TTTATGATGCCATGAGAAAGTTGGTTGAACAAACAGAAGATGGAGGCAATGGTGAGGAGCCTAAGGTTGAGGGAAGTAGGGGTTCCTCTGCATTTGTTGT TACTTCTGAGCTTGTGCCTCGAAAGCCTACCTTTCCTGAGAATAGCAGAGCGATGATGGATGCTTTAGTCTCCCTCATTTACAAGTCTGGAGATGAGCGG ACCAAGGCTCGTGCTATGCTCTGTGATATCTACCATCATGCTCTCCTGGATGAGCTCTCAACCTCCCGTGACCTGTTATTGATGAGTCACCTGCAAGATA ATATTCAGCACATGGACATTTCAAGCCAGATACTTTTTAACAGGGCTATGGCACAGCTTGGTTTATGTGCATTCCGTGTTGGGATGATCACTGAAGCACA TGGCTGCCTTTTTGAGTTATATTCTGGTGGGAGGGTGAAAGAGTTGCTTGCACAAGGTGTTTCACAAAGTCGATACCATGAGAAGACTCAAGAACAGGAA AGACTGGAAAGGAGACGTCAGATGCCATATCATATGCACATAAATCTTGAGCTTCTAGAGTCTGTTCATCTAATTTGTGCAATGCTGCTGGAGGTCCCGA ACATGGCAGCCAACATTTATGATGCTAAGCGCAAAGTCATTAGCAAGACATTTAGGCGGTTGCTCGAGGTAACTGAGAGGCAAACTTTCACTGGTCCTCC TGAAAATGTCAGGGATCATGTAATGGCTGCTACACGGGCCCTTACCAAAGGAGACTTCCAGAAGGCCTTTGATGTTATCAACTCTCTTGATGTCTGGAAG CTCCTCAGAGATAGAGATGGTGTTCTTGAAATGCTCAAAGCCAAGATAAAGGAAGAAGCTCTGAGGACCCACCTCTTTTCCTACTCTTCCTCCTATGATT CAGTGGGCTTGGACCTGCTGAGCAAAATGTTTGACCTTTCACCAATCCAGACTCAGATCATTGTAAGCAAAATGATGATCAATGAGGAGCTCCATGCAAG TTGGGACCAGCCAACACAGTGCATTGTCTTCTATGACATTGAGCGCACACGGTTGCAGGCTCTGGCATTCCAGCTGACAGAGAAGCTGTCAATCCTTGTT GAAAGTAATGAAAGAGCAATAGAGACTAGGATTGGTGGTGGTGGTCTGGATTTACCTCAGAGGCGGAGAGAAGGCCAGGATTTCGCTAATGCGGCTGCCT CAGGCGGCAAGTGGCAAGAAAAGTCATCTTTCATTCAGGGAAGGCCAGGTTATAGCCGTTCTGGATATAGTGGTGGTGGAAGATCCCAGGACCTAGGCCA AGTTGTTGGGGGTGGCCATTCGAGGGGGGCTGGTCATTTACGAGCAGGAGGTGGATATTCTGGAGGCTCAAGGTATCAGGATGGTTCATCTCGCATGGTT AATCTCCAAAGGGGAGCTCGTGCTTGA
AA sequence Show only first row Show all	>Potri.016G063500.3 pacid=42809400 polypeptide=Potri.016G063500.3.p locus=Potri.016G063500 ID=Potri.016G063500.3.v4.1 annot-version=v4.1 MSSRFWTQGGSDSDEEESENDEDEVEKEEAGESTAQSAQNRYLRETASDSDDSDDKKRVVRSAKDKRFEELSATVDQMKNAMKINDWVSLQESFDKINKQ LEKVMRVMESEKAPALYIKALVMLEDFLNQALANKEAKKKMSSSNAKALNAMKQKLKKNNKQYEDQINKYREHPESEEEPEAEEEDESDLEFEEDPSKIA MSNEEDEDNVDDQTEKDGGWEKMMSKKDKLMDKQFAKDPSEITWDIVNKKFKEIVAARGRRGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVS PGLSGHMPINVWKNCVQNMLIILDILEQYPSIVVDDTVEPDENETQKGGDHNGPIRIWGNLVAFLERIDSEFFKSLQCIDPHTHEYVERLQDEPMFLVLA QNAQEYLEHVGDLKAAAKVALKRVELIYYKPQEVYDAMRKLVEQTEDGGNGEEPKVEGSRGSSAFVVTSELVPRKPTFPENSRAMMDALVSLIYKSGDER TKARAMLCDIYHHALLDELSTSRDLLLMSHLQDNIQHMDISSQILFNRAMAQLGLCAFRVGMITEAHGCLFELYSGGRVKELLAQGVSQSRYHEKTQEQE RLERRRQMPYHMHINLELLESVHLICAMLLEVPNMAANIYDAKRKVISKTFRRLLEVTERQTFTGPPENVRDHVMAATRALTKGDFQKAFDVINSLDVWK LLRDRDGVLEMLKAKIKEEALRTHLFSYSSSYDSVGLDLLSKMFDLSPIQTQIIVSKMMINEELHASWDQPTQCIVFYDIERTRLQALAFQLTEKLSILV ESNERAIETRIGGGGLDLPQRRREGQDFANAAASGGKWQEKSSFIQGRPGYSRSGYSGGGRSQDLGQVVGGGHSRGAGHLRAGGGYSGGSRYQDGSSRMV NLQRGARA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G56150		ATTIF3C1, ATEIF...	eukaryotic translation initiat...		Potri.016G063500 [exp]	0	1	TIF3.8
AT1G71500			Rieske (2Fe-2S) domain-contain...		Potri.019G073900 [exp]	8.71	0.9630
AT3G47860		CHL	chloroplastic lipocalin (.1)		Potri.001G420800 [exp]	12.00	0.9561
AT5G20935			unknown protein		Potri.009G155300 [exp]	12.88	0.9593
AT5G35100			Cyclophilin-like peptidyl-prol...		Potri.006G189900 [exp]	16.70	0.9593
AT5G58260		NdhN	NADH dehydrogenase-like comple...		Potri.013G160600 [exp]	18.46	0.9549
AT2G23670		YCF37	homolog of Synechocystis YCF37...		Potri.007G034300 [exp]	18.97	0.9580
AT1G26220			Acyl-CoA N-acyltransferases (N...		Potri.008G113600 [exp]	19.10	0.9569
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Potri.001G151300 [exp]	21.49	0.9567	Lil3_3,Pt-LIL3.1
AT5G08050			Protein of unknown function (D...		Potri.015G058600 [exp]	21.90	0.9510
AT5G65220			Ribosomal L29 family protein ...		Potri.007G093700 [exp]	25.09	0.9567

Compare expression of checked genes

Potri.016G063500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.