Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58470 282 / 2e-96 nucleic acid binding;methyltransferases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000248 [exp] 306 / 5e-106 AT3G58470 288 / 8e-99 nucleic acid binding;methyltransferases (.1) Lus10005597 [exp] 243 / 2e-81 AT3G58470 230 / 3e-76 nucleic acid binding;methyltransferases (.1) Lus10016230 [exp] 201 / 3e-65 AT3G58470 204 / 4e-66 nucleic acid binding;methyltransferases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF10237 [poplar] [flax] N6-adenineMlase Probable N6-adenine methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.016G063600.6 pacid=42809870 polypeptide=Potri.016G063600.6.p locus=Potri.016G063600 ID=Potri.016G063600.6.v4.1 annot-version=v4.1 ATGGAAGAAGAGCAAGTGAAACCTCAAAACGATACCGCTTTCACTGAAGACGACGACGACGACCCTCCAACGTTAAGTTCACACGCTCTGGCTGCTTTGA AAGAGTTCCTCCAACAACAACAACCCATCACTGACCAAACTTCACAAACCGACGGAGAAGGTTCTGAAACCGGAGAGAAAGTAGCCTTAGTAGCAGAGGA CTGGAGGCTTAGCCAGTTTTGGTACGACCCGTTAACCGCAGAGACTGTAGCAAACGAGGTTCTTGCTTTATTAACCAATCCCAGTTCACTCGCAGTTTGT ATCGCTTGTCCAACCCTTTATGCTTACATCAAGAAAATTGATCCGAGTGTGAATGTGCAATTACTGGAGTATGACAAGAGATTTGAGCAATATGGGAGTG ATTTCACATTTTATGATTATAATAAACCAGAAGATTTGCCTGGTCAACTTAAGCATGCTTTTCAAGTTGTTGTTGCAGATCCTCCTTATTTGAGTCAGGA GTGCTTAGAAAAGGTTGCTCAAGCAATTTCTTTTCTTGCAATACCAGGAAAATCATATTTGCTTCTGCTCACAGGAGACGTGCAGAAGGATAAGGCAGCT GAGCTCTTAGGATTGCATTCATGTGGTTTTAGGCCTCAACATTCTAGCAAACTTGGGAATGAATTTAGGCTATTCACAAACTATGACCCTGGAATGAGAC TAGGAGGGTGGGAGCTGGAGAAATAG
AA sequence Show only first row Show all	>Potri.016G063600.6 pacid=42809870 polypeptide=Potri.016G063600.6.p locus=Potri.016G063600 ID=Potri.016G063600.6.v4.1 annot-version=v4.1 MEEEQVKPQNDTAFTEDDDDDPPTLSSHALAALKEFLQQQQPITDQTSQTDGEGSETGEKVALVAEDWRLSQFWYDPLTAETVANEVLALLTNPSSLAVC IACPTLYAYIKKIDPSVNVQLLEYDKRFEQYGSDFTFYDYNKPEDLPGQLKHAFQVVVADPPYLSQECLEKVAQAISFLAIPGKSYLLLLTGDVQKDKAA ELLGLHSCGFRPQHSSKLGNEFRLFTNYDPGMRLGGWELEK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58470			nucleic acid binding;methyltra...		Potri.016G063600 [exp]	0	1
AT5G45590			Ribosomal protein L35 (.1)		Potri.003G099900 [exp]	1.00	0.9084
AT5G28060			Ribosomal protein S24e family ...		Potri.005G049400 [exp]	1.41	0.8763	Pt-RPS24.1
AT1G14980		CPN10	chaperonin 10 (.1)		Potri.009G068900 [exp]	3.16	0.8526	CPN10.2
AT2G03780			Translin family protein (.1)		Potri.010G138300 [exp]	4.89	0.7897
AT5G55140			ribosomal protein L30 family p...		Potri.002G225600 [exp]	5.29	0.8564
AT2G44850			unknown protein		Potri.002G137300 [exp]	5.47	0.8732
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Potri.017G059000 [exp]	5.91	0.8347
					Potri.006G257700 [exp]	6.48	0.7938
AT5G07900			Mitochondrial transcription te...		Potri.004G013100 [exp]	7.93	0.8216
AT4G31790			Tetrapyrrole (Corrin/Porphyrin...		Potri.002G023700 [exp]	8.12	0.8138

Compare expression of checked genes

Potri.016G063600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.